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FLASH GENE
Symbol TNFRSF1B contributors: mct/npt - updated : 29/10/2008
HGNC name tumor necrosis factor receptor superfamily, member 1B
HGNC id 11917
Location 1p36.32      Physical location : 12.227.059 - 12.269.276
Synonym name
  • soluble TNFR1B variant 1
  • tumor necrosis factor beta receptor
  • p80 TNF-alpha receptor
  • p75 TNF receptor
    • Synonym symbol(s) TNFR2, TNFR75, TNFBR, TNFR80, CD120b, P75,TR1B, TNF-R-II, TBPII
    DNA
    TYPE functioning gene
    STRUCTURE 42.22 kb     10 Exon(s)
    Genomic sequence alignment details
    10 Kb 5' upstream gene genomic sequence study
    MAPPING cloned Y linked Y status confirmed
    Map pter - D1S2267 - NPPA - PGD - [D1S434 - D1S228 - D1S2834 - TNFRSF1B - D1S2728 ] - CLCNKA - D1S436 - CLCNKB - NPPB - D1S199 - cen
    Authors Glenn (00)
    Physical map
    KIAA1337 1p36.21 KIAA1337 protein FBXO2 1p36.21 F-box only protein 2 FBX30 1p36.21 F-box protein FBX30 FBXO6 1p36.23-p36.11 F-box only protein 6 MAD2L2 1p36 MAD2 mitotic arrest deficient-like 2 (yeast) LOC374946 1p36.21 hypothetical gene supported by AK075558; BC021286 AGTRAP 1p36.21 angiotensin II receptor-associated protein DKFZp434E1410 1p36.21 hypothetical protein DKFZp434E1410 MTHFR 1p36.3 5,10-methylenetetrahydrofolate reductase (NADPH) CLCN6 1p36.2 chloride channel 6 NPPA 1p36.2 natriuretic peptide precursor A NPPB 1p36.2 natriuretic peptide precursor B LOC390997 1 similar to SET binding factor 1 isoform a; myotubularin-related protein 5 MGC33867 1p36.21 hypothetical protein MGC33867 PLOD 1p36.31 procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI) MFN2 1p36.21 mitofusin 2 FLJ12438 1p36.21 hypothetical protein FLJ12438 TNFRSF8 1p36 tumor necrosis factor receptor superfamily, member 8 TNFRSF1B 1p36.32 tumor necrosis factor receptor superfamily, member 1B LOC390998 1 similar to 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM) (Laminin receptor homolog) FLJ10619 DHRS3 1p36.1 dehydrogenase/reductase (SDR family) member 3 LOC343066 1p36.21 similar to Arylacetamide deacetylase (AADAC) LOC126767 1p36.21 similar to arylacetamide deacetylase MGC35194 1p36.21 hypothetical protein MGC35194 LOC390999 1 similar to Hypothetical protein DJ1198H6.2 LOC65121 1p36.21 hypothetical protein similar to preferentially expressed antigen of melanoma LOC343068 1p36.21 hypothetical protein LOC343068 LOC391000 1 similar to Hypothetical protein DJ845O24.1 LOC343069 1p36.21 similar to Heterogeneous nuclear ribonucleoprotein C-like dJ845O24.4 (hnRNP core protein C-like) LOC65122 1p36.21 hypothetical protein similar to preferentially expressed antigen of melanoma LOC343070 1p36.21 hypothetical protein LOC343070
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    10 - 3682 - 461 - Ban (2008)
    EXPRESSION
    Type widely
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    blood / hematopoieticspleen   highly
    Cardiovascularheart   moderately
    Endocrinepancreas   moderately
    Urinarykidney   moderately
    tissue
    SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
    Epithelialsecretoryglandularendocrine 
    Epithelialsecretoryglandularexocrine 
    Lymphoid    
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
  • four extracytoplasmic cysteine-rich pseudorepeats typical for the TNFR superfamily
  • a preligand assembly domain (PLAD) in CRD1 mediating ligand-independent receptor assembly and signaling
  • a small cytoplasmic domain with the serine/threonine kinase but lacking a DEATH domain
    • mono polymer homomer , trimer
    HOMOLOGY
    Homologene
    FAMILY
  • tumor necrosis factor receptor superfamily
    • CATEGORY signaling cytokine , receptor
    SUBCELLULAR LOCALIZATION extracellular
        plasma membrane
    intracellular,nucleus
    text type I transmembrane protein
    basic FUNCTION
  • may be playing a role in protecting neurons from apoptosis by stimulating antioxidative pathways
  • leading to selective ASK1 ubiquitination and degradation in proteasomes
  • leading to TRAF2 ubiquitination and subsequent proteasomal degradation
    • CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
  • TNFRSF1B/SMURF2 complex
    • INTERACTION
    DNA
    RNA
    small molecule
    protein
  • interacting with SMURF2 and TRAF2 (SMURF2-induced TNFRSF1B ubiquitination and subcellular relocalization of TNFRSF1B and TRAF2 enables the specific activation of the JNK pathway)
    • cell & other
    REGULATION
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Other morbid association(s)
    TypeGene ModificationChromosome rearrangementProtein expressionProtein Function
    tumoral   deletion    
    in neuroblastoma
    Susceptibility
  • to familial combined hyperlipidemia
  • to systemic lupus erythematosis and to narcolepsy
  • to coronary artery disease and to osteoporosis
    • Variant & Polymorphism other A593 - T598 - C620 haplotype decreased bone mineral density
    Candidate gene
    Marker
    Therapy target
    ANIMAL & CELL MODELS