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FLASH GENE
Symbol VANGL1 contributors: mct/npt - updated : 03-04-2015
HGNC name vang-like 1 (van gogh, Drosophila)
HGNC id 15512
DNA
TYPE functioning gene
SPECIAL FEATURE component of a cluster, tail to tail
text clustered tail to tail with CASQ2
STRUCTURE 56.27 kb     8 Exon(s)
Genomic sequence alignment details
10 Kb 5' upstream gene genomic sequence study
MAPPING cloned Y linked N status provisional
Physical map
MRP63P1 1p13.1 mitochondrial ribosomal protein 63 pseudogene 1 LOC391067 1 LOC391067 TRIM33 1p13.1 tripartite motif-containing 33 LOC347675 1p13.1 eukaryotic translation initiation factor 2 beta-like pseudogene LOC339395 1p13.1 similar to Pyruvate kinase, M2 isozyme BCAS2 1p21-p13.3 breast carcinoma amplified sequence 2 FLJ37099 1p13.1 FLJ37099 protein AMPD1 1p13 adenosine monophosphate deaminase 1 (isoform M) NRAS 1p13.2 neuroblastoma RAS viral (v-ras) oncogene homolog D1S155E 1p22 NRAS-related gene FLJ21168 1p13.1 hypothetical protein FLJ21168 SYCP1 1p13 synaptonemal complex protein 1 TSHB 1p13 thyroid stimulating hormone, beta TSPAN-2 1p13.1 tetraspan 2 NGFB 1p13.1 nerve growth factor, beta polypeptide LOC391068 1 similar to mCAF1 protein VANGL1 1p11-p13.1 vang-like 1 (van gogh, Drosophila) LOC387624 1 hypothetical gene supported by NM_024062 CASQ2 1p13.3-p11 calsequestrin 2 (cardiac muscle) NHLH2 1p12-p11 nescient helix loop helix 2 LOC343019 1p12 similar to Hnrpa1 protein SLC22A15 1p12 solute carrier family 22 (organic cation transporter), member 15 FLJ38716 1p12 hypothetical protein FLJ38716 ATP1A1 1p13 ATPase, Na+/K+ transporting, alpha 1 polypeptide MGC16179 1p12 hypothetical protein MGC16179 LOC148766 1p12 hypothetical LOC148766 CD58 1p13 CD58 antigen, (lymphocyte function-associated antigen 3) IGSF3 1p13 immunoglobulin superfamily, member 3 LOC388667 1 LOC388667 LOC391069 1 similar to Glyceraldehyde 3-phosphate dehydrogenase, liver (GAPDH) LOC339396 1p12 similar to neurofilament, heavy polypeptide 200kDa; Neurofilament, heavy polypeptide; neurofilament, heavy polypeptide (200kD) CD2 1p13.1 CD2 antigen (p50), sheep red blood cell receptor PTGFRN 1p13.1-q21.3 prostaglandin F2 receptor negative regulator IGSF2 1p13 immunoglobulin superfamily, member 2 TTF2 1p13.1 transcription termination factor, RNA polymerase II
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
8 - 8691 - 524 - 2002 12011995
8 - 8685 - 522 - 2002 12011995
8 - 8635 - 524 - 2002 12011995
EXPRESSION
Type
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Digestiveintestinelarge intestinecolon highly
Nervousbrain    
Reproductivefemale systemovary  specific
 male systemtestis  specific
cell lineage
cell lines
fluid/secretion
at STAGE
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • N terminus lacks plasma membrane (PM) targeting determinants, and these are restricted to the C- terminus, including the predicted PDZBM motif at the C-terminus
  • four transmembrane domains
  • C-terminal Ser/Thr-X-Val motif, KAI1(CD82) interacting tetraspanin (KITENIN domain)
  • HOMOLOGY
    interspecies ortholog to xenopus Stbm
    intraspecies homolog to VANGL2
    Homologene
    FAMILY
  • Vang family
  • CATEGORY unknown/unspecified
    SUBCELLULAR LOCALIZATION     plasma membrane
    text
  • integral membrane proteins that assemble into asymmetrically distributed membrane complexes that establish planar cell polarity in epithelial cells and that regulate convergent extension movements during embryogenesis
  • NOS1AP colocalizes with both SCRIB and VANGL1 along cellular protrusions in metastatic breast cancer cells, but does not colocalize with either SCRIB or VANGL1 at cell junctions in normal breast cells
  • basic FUNCTION
  • may serve as a diagnostic marker for hepatocellular carcinoma and as a potential molecular target for development of novel therapeutic drugs
  • participating in the regulation of the tumor formation and metastasis by interacting with CD82, a metastasis suppressor
  • may serve as an effector mediating the intestinal trefoil factor healing response of the intestinal mucosa (Kalabis 2006)
  • functional KITENIN complex acts as an executor with regard to cell motility and thereby controls colorectal cancer cell invasion, which may contribute to promoting metastasis (Kho 2009)
  • VANGL1 and VANGL2 are essential for embryonic development, cell adhesion, migration and polarity
  • CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS development
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein
  • interacting with CD82
  • induced the expression of the epithelial-mesenchymal transition (EMT) markers (N-cadherin, ZEB1, ZEB2, SNAI1 and SNAI2) as well as the glioma stemness markers (CD133, ALDH1 and EPHB1)
  • cell & other
    REGULATION
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Other morbid association(s)
    TypeGene ModificationChromosome rearrangementProtein expressionProtein Function
    tumoral     --over  
    in gastric cancer
    tumoral       gain of function
    in hepatocellular carcinoma
    constitutional germinal mutation      
    in sporadic or familial cases of neural tube defects
    tumoral     --over  
    increased glioma invasiveness and progression, associated with the up-regulation of EMT and stemness markers
    Susceptibility to neural-tube defects (NTDs)
    Variant & Polymorphism other
  • V239I and R274Q asoociated to neural-tube defects (Kibar 2007)
  • significant association between VANGL1 rare genetic variants, especially missense mutations, and NTDs risk
  • Candidate gene
    Marker might serve as a diagnostic marker for hepatocellular carcinoma
    Therapy target
    SystemTypeDisorderPubmed
    cancerdigestivecolon
    targeting of VANGL1 can function as a chemotherapeutic strategy against colon cancer
    cancerdigestiveliver
    potential molecular target for development of novel therapeutic drugs
    ANIMAL & CELL MODELS