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FLASH GENE
Symbol TRIM42 contributors: KTN/npt - updated : 02-02-2009
HGNC name tripartite motif-containing 42
HGNC id 19014
DNA
TYPE functioning gene
STRUCTURE 23.11 kb     5 Exon(s)
10 Kb 5' upstream gene genomic sequence study
MAPPING cloned Y linked N status confirmed
Map cen - D3S3554 - D3S1316 - TRIM42 - D3S1309 - D3S3612 - qter
Authors UCSC (2009)
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
5 - 2538 82.6 723 - -
EXPRESSION
Type
   expressed in (based on citations)
organ(s)
cell lineage
cell lines
fluid/secretion
at STAGE
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • an N-terminal RING zinc finger
  • two B box domains (one type 1 and one type 2), linked to a coiled-coil domain (RBCC) so called tripartite motif (TRIM)
  • a COS (C-terminal subgroup one signature) domain
  • an FN3 (fibronectin type 3) domain
  • HOMOLOGY
    interspecies homolog to rattus Trim42 (87.6 pc)
    homolog to murine Trim42 (87.1 pc)
    Homologene
    FAMILY
  • RBCC (TRIM family)
  • C-III TRIM family
  • CATEGORY regulatory , transcription factor
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,cytoplasm,organelle,mitochondria
    intracellular,nucleus
    basic FUNCTION
  • identifying specific cell compartments
  • CELLULAR PROCESS cell life, differentiation
    nucleotide, transcription
    PHYSIOLOGICAL PROCESS development
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule metal binding,
  • Zn2+
  • protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS