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FLASH GENE
Symbol CLRN3 contributors: KTN/npt - updated : 12/11/2008
HGNC name clarin 3
HGNC id 20795
Location 10q26.2      Physical location : 129.676.113 - 129.691.211
Synonym name
  • transmembrane protein 12
  • Usher syndrome type-3A-like protein 1
    • Synonym symbol(s) USH3AL1, TMEM12, MGC32871, DKFZp686F11218
    DNA
    TYPE functioning gene
    STRUCTURE 15.10 kb     3 Exon(s)
    MAPPING cloned Y linked N status provisional
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    3 - 1173 25.2 226 - Adato (2002)
    EXPRESSION
    Type
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Digestiveintestine   highly
     liver   predominantly
    Urinarykidney   moderately
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
    conjugated GlycoP
    HOMOLOGY
    interspecies homolog to dog CLRN3 (76.1 pc)
    homolog to chimpanzee CLRN3 (97.8 pc)
    homolog to rattus Clrn3 (75.7 pc)
    homolog to murine Clrn3 (73 pc)
    Homologene
    FAMILY
  • clarin family
    • CATEGORY unknown/unspecified
    SUBCELLULAR LOCALIZATION     plasma membrane
    text multi-pass membrane protein
    basic FUNCTION unknown
    CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS