| 1 | ANKRD27, TBC1D5, VPS29
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| Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29
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| Crawley-Snowdon H, Yang JC, Zaccai NR, Davis LJ, Wartosch L, Herman EK, Bright NA, Swarbrick JS, Collins BM, Jackson LP, Seaman MNJ, Luzio JP, Dacks JB, Neuhaus D, Owen DJ.
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| Nat Commun. Oct 6;11(1):5031. doi: 10.1038/s41467-020-18773-2. 2020
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| 2 | ANKRD27, BLOC1S1, BLOC1S6, HPS4, RAB32, RAB38, VAMP7
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| BLOC-1 and BLOC-3 regulate VAMP7 cycling to and from melanosomes via distinct tubular transport carriers.
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| Dennis MK, Delevoye C, Acosta-Ruiz A, Hurbain I, Romao M, Hesketh GG, Goff PS, Sviderskaya EV, Bennett DC, Luzio JP, Galli T, Owen DJ, Raposo G, Marks MS.
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| J Cell Biol 214(3):293-308. doi: 10.1083/jcb.201605090. 2016
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| 3 | ANKRD27, RAB32, RAB38
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| Multiple Roles of VARP in Endosomal Trafficking: Rabs, Retromer Components and R-SNARE VAMP7 Meet on VARP.
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| Fukuda M.
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| Traffic 17(7):709-19. doi: 10.1111/tra.12406. Epub 2016 May 13. Review.
2016
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| 4 | ANKRD27, VAMP7, VPS29
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| VARP is recruited on to endosomes by direct interaction with retromer, where together they function in export to the cell surface.
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| Hesketh GG, Pérez-Dorado I, Jackson LP, Wartosch L, Schäfer IB, Gray SR, McCoy AJ, Zeldin OB, Garman EF, Harbour ME, Evans PR, Seaman MNJ, Luzio JP, Owen DJ.
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| Dev Cell. Jun 9;29(5):591-606. doi: 10.1016/j.devcel.2014.04.010. Epub 2014 May 22. 2014
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| 5 | ANKRD27, TYRP1, VPS35
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| Identification of molecular heterogeneity in SNX27-retromer-mediated endosome-to-plasma-membrane recycling.
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| McGough IJ, Steinberg F, Gallon M, Yatsu A, Ohbayashi N, Heesom KJ, Fukuda M, Cullen PJ.
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| J Cell Sci. Nov 15;127(Pt 22):4940-53. doi: 10.1242/jcs.156299. Epub 2014 Oct 2. 2014
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| 6 | ANKRD27
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| The Rab21-GEF activity of Varp, but not its Rab32/38 effector function, is required for dendrite formation in melanocytes.
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| Ohbayashi N, Yatsu A, Tamura K, Fukuda M.
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| Mol Biol Cell 23(4):669-78. doi: 10.1091/mbc.E11-04-0324. Epub 2011 Dec 14.
2012
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| 7 | ANKRD27, RAB32, RAB38, TYRP1, VAMP7
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| Structure-function analysis of VPS9-ankyrin-repeat protein (Varp) in the trafficking of tyrosinase-related protein 1 in melanocytes.
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| Tamura K, Ohbayashi N, Ishibashi K, Fukuda M.
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| J Biol Chem 286(9):7507-21. Epub 2010 Dec 26. 2011
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| 8 | ANKRD27, RAB32, RAB38, TYRP1
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| Varp is a novel Rab32/38-binding protein that regulates Tyrp1 trafficking in melanocytes.
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| Tamura K, Ohbayashi N, Maruta Y, Kanno E, Itoh T, Fukuda M.
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| Mol Biol Cell 20(12):2900-8. Epub 2009 Apr 29.
2009
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| 9 | ANKRD27, RAB21, VAMP7
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| Role of Varp, a Rab21 exchange factor and TI-VAMP/VAMP7 partner, in neurite growth.
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| Burgo A, Sotirakis E, Simmler MC, Verraes A, Chamot C, Simpson JC, Lanzetti L, Proux-Gillardeaux V, Galli T.
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| EMBO Rep 10(10):1117-24. Epub 2009 Sep 11.
2009
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| 10 | RAB21, RAB32, RAB38, ANKRD27
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| Varp interacts with Rab38 and functions as its potential effector.
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| Wang F, Zhang H, Zhang X, Wang Y, Ren F, Zhang X, Zhai Y, Chang Z.
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| Biochem Biophys Res Commun 372(1):162-7. Epub 2008 May 12. 2008
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| 11 | ANKRD27, RAB21
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| Varp is a Rab21 guanine nucleotide exchange factor and regulates endosome dynamics.
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| Zhang X, He X, Fu XY, Chang Z.
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| J Cell Sci 119(Pt 6):1053-62. 2006
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| 12 | AARSD1, ACSM2A, ACTL8, ADAD2, ADAM6, AGAP9, AHCTF1P, ALDH1L2, AMER1, AMN1, ANGEL2, ANKFN1, ANKHD1, ANKIB1, ANKMY2, ANKRD10, ANKRD18A, ANKRD19, ANKRD26, ANKRD27, ANKRD31, ANKRD33, ANKRD34A, ANKRD34C, ANKRD35, ANKRD50, ANKS6, ARMC5, ATAD2B, ATP5SL, ATP5Sl, BTBD11, C10orf139, C10orf31, C11orf37, C11orf39, C11orf44, C11orf55, C12orf27, C12orf35, C12orf40, C12orf47, C12orf50, C12orf55, C14orf105, C14orf180, C14orf181, C14orf70, C15orf28, C15orf37, C15orf53, C15orf54, C15orf56, C16orf13, C16orf59, C16orf68, C16orf81, C17orf47, C17orf53, C17orf55, C17orf56, C17orf65, C17orf66, C17orf69, C17orf72, C17orf76, C17orf77, C17orf78, C18orf15, C18orf26, C18orf33, C18orf62, C19orf46, C1orf112, C1orf125, C1orf127, C1orf131, C1orf132, C1orf62, C1orf83, C1orf92, C1orf96, C20orf152, C20orf175, C20orf200, C20orf46, C21orf125, C21orf130, C22orf37, C2orf54, C2orf61, C2orf67, C3orf30, C3orf41, C3orf44, C3orf56, C4orf21, C4orf30, C4orf32, C4orf35, C5orf17, C5orf30, C5orf34, C6orf103, C6orf140, C6orf147, C6orf214, C7orf40, C7orf42, C7orf52, C8orf31, C8orf34, C8orf47, C9orf106, C9orf139, C9orf66, C9orf73, C9orf97, CALML4, CBR4, CC2D2A, CCDC114, CCDC115, CCDC121, CCDC128, CCDC129, CCDC138, CCDC140, CCDC141, CCDC144B, CCDC148, CCDC43, CCDC57, CCDC63, CCDC65, CCDC69, CCDC83, CCDC87, CCDC93, CCDC97, CCNJ, CCNJL, CCT6AP1, CDC20B, CEP164, CEP170B, CKAP2L, CLEC4GP1, CNTD2, CNTNAP5, COA1, CROCCL1, CROCCL2, CXorf18, CXorf25, CXorf55, CXorf62, CYP4V2, DCAF17, DDX60, DEF8, DEPDC1B, DEPDC4, DHRS12, DIS3L, DNAAF3, DNHD1, DNHD1L, DNHL1, DTWD2, DUSP27, DZIP1L, ECHDC2, EHBP1L1, EOGT, EP400NL, FADS6, FAM108C1, FAM133A, FAM134A, FAM139A, FAM149A, FAM149B1, FAM153C, FAM173B, FAM182A, FAM21A, FAM21C, FAM45A, FAM66A, FAM66B, FAM66C, FAM66D, FAM66E, FAM71D, FAM73A, FAM75C1, FAM78A, FAM87B, FAM90A1, FAM98A, FAM98B, FAM98C, FLAD1, FSD2, GAB4, GARIN1B, GARNL3, GAS2L3, GK5, GLYATL1, GMPPA, GOLGA9P, GSTCD, H2BFM, HDX, HECTD2, HFM1, IFTAP, IGSF22, IGSF5, ISLR2, KANK2, KANK3, KANK4, KCTD19, KIAA0913, KIAA1324L, KIF24, KLHDC7A, KLHL26, L3MBTL4, LARP6, LBA1, LIME1, LINC00299, LOXHD1, LRRC36, LRRC37A4, MARCH9, MIB2, MOBKL1B, MOBKL2A, MOBKL2B, MOBKL2C, MORC4, MTURN, MYH15, N6AMT1, NAA30, NAG8, NDUFAF5, NKAIN3, NOXIN, NUBPL, OTOGL, OTOGL, PDZK1P1, PHF20L1, PIANP, PID1, PLCH1, POLR3D, PROX2, PRR10, RANBP6, RETREG3, RFPL4B, RIPPLY2, RITA1, SCIMP, SDE2, SETD4, SFXN4, SIRPD, SLC10A5, SLC25A29, SLC35E1, SLC35F1, SLC35F3, SLC38A10, SLC38A11, SLC38A7, SMAGP, SMG8, SMYD4, SNHG10, SNHG11, SNX30, STAG3L1, SWSAP1, TANC2, TBRG4, TDRD7, TERB1, TMEM105, TMEM151B, TMEM222, TPD52L3, TRMT2B, TSGA10IP, TTC29, UAP1L1, VPS35L, WDR63, WDR90, WDTC1, ZBTB46, ZIK1, ZMAT1, ZMAT2, ZNF12, ZNF321, ZNF347, ZNF430, ZNF433, ZNF441, ZNF442, ZNF483, ZNF526, ZNF527, ZNF569, ZNF600, ZNF615, ZNF619, ZNF620, ZNF662, ZNFX1, ZYG11B, ZZZ3
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| Complete sequencing and characterization of 21,243 full-length human cDNAs.
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| Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S.
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| Nat Genet 36(1):40-5. Epub 2003 Dec 21. 2004
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| 13 | AIF1L, ANKHD1, ANKRD20A1, ANKRD27, ANKRD32, APH1B, APOLD1, ARMC4, ATXN10, C10orf10, C10orf10, C10orf118, C2orf14, C2orf16, C6orf60, C6orf62, C8orf71, CALCOCO1, CAMKK1, CCDC113, CCDC135, CCDC9, CCDC90B, CCNB2, CD99L2, CHPF, CLIC4, CLPB, CRELD1, CYBRD1, DDX47, DHRS7B, ESPN, FIP1L1, FLYWCH1, FYTTD1, GABARAPL1, GOLT1B, GPS2, GRIPAP1, HIGD1A, IER3IP1, KIF18A, KIRREL2, KLC2, LHX6, LMAN2L, MAF1, MED23, MIS12, MOB4, MYCBPAP, NCALD, NELF, NELFB, NRBF2, NRIP2, NRIP2, NRSN2, NUDT12, PCBD2, PMFBP1, PRPF31, PRSS23, QRSL1, RGMA, RGMB, RNF123, RNF146, RWDD3, SAMHD1, SECISBP2, SEMA4F, SERBP1, SERP1, SH3BP5L, SLC25A24, SLC25A39, SLC37A3, SLC41A2, SLC6A16, SMC6, SPEF1, STMN2, TARDBP, TBC1D3, TBL2, TFIP11, TIGD6, TIMMDC1, TMEM117, TMEM186, TNB, TRAF7, TRAPPC8, TSC22D3, TSPAN14, TWF2, UBA5, UNC50, WDR24, WDR37, WDR91, WSB1, YIPF3, ZC3H13, ZMYND12, ZMYND15, ZRANB3
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| Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
|
| Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Bocher M, Blocker H, Bauersachs S, Blum H, Lauber J, Dusterhoft A, Beyer A, Kohrer K, Strack N, Mewes HW, Ottenwalder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A.
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| Genome Res 11(3):422-35. 2001
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| 14 | ADIPOR1, AIG1, AMDHD2, ANKHD1, ANKRD20A1, ANKRD27, ANKRD32, APH1A, APH1B, APIP, APOLD1, ARS2, ASCC1, ATXN10, BOLA1, C10orf10, C14orf166, C19orf56, C20orf109, C20orf4, C2orf14, C2orf16, C6orf60, C6orf62, CALCOCO1, CAMKK1, CCDC113, CCDC53, CCDC9, CCNB2, CD99L2, CDK5RAP1, CDK5RAP1, CGI-96, CHMP5, CHPF, CIAO2B, CLIC4, CLPB, COPZ1, COQ4, COQ6, CRELD1, CUTC, CYBRD1, DDX47, DERA, DHRS7, DHRS7B, DHRS7B, DPH5, DTNB, DYNC1LI2, EEF1AKNMT, ELOVL1, EMC9, ERGIC3, ESPN, EXOSC1, EXOSC3, FAHD2A, FAM108B1, FAM18B, FAM32A, FAM82B, FCF1, FIP1L1, FLYWCH1, FYTTD1, GABARAPL1, GET4, GLOD4, GLRX2, GOLT1B, GOLT1B, GPR89A, GPS2, GRIPAP1, HDDC2, HDGFRP3, HIGD1A, IER3IP1, IFT52, ISOC1, KIF18A, KIF20B, KIRREL2, KL3, KLC2, LACTB2, LHX6, LMAN2L, LUC7L2, MAF1, MAGMAS, MECR, MED23, MED31, MEMO, METTL9, MIS12, MOABHD5, MOB4, MPC1, MRPL11, MRPL2, MRPL4, MRPL48, MRPS15, MRPS16, MRPS16P2, MRPS18C, MRPS23, MRPS33, MTCH1, MTERF3, MTO1, MYCBPAP, NCALD, NCIE2, NDUFAF1, NELF, NELFB, NFU1, NMD3, NOSIP, NRBF2, NRIP2, NRIP2, NRSN2, NUDT12, OTUD6B, PARVB, PCBD2, PHF20L1, PIGT, PMFBP1, PNAS-4, PRPF31, PRSS23, PTRH2, QRSL1, RBMX2, RGMA, RGMB, RNF103-CHMP3, RNF123, RNF146, RRNAD1, RRP15, RWDD1, RWDD3, SAMHD1, SAMM50, SCCPDH, SECISBP2, SEMA4F, SERBP1, SERBP1, SERP1, SH3BP5L, SIDT2, SLC25A24, SLC25A39, SLC35C2, SLC37A3, SLC41A2, SLC6A16, SLMO2, SMC6, SPEF1, SQRDL, STARD10, STMN2, SYF2, TARDBP, TBC1D3, TBL2, TFB1M, TFIP11, THAP4, THAP4, TIGD6, TIMMDC1, TMED5, TMED7, TMEM47, TPPP3, TRAF7, TRAPPC12, TRAPPC4, TRMT6, TRNT1, TSC22D3, TSPAN14, TWF2, UBE1DC1, UBE2J1, UCHL5, UNC50, USP39, UTP11L, VPS36, WDR37, WDR50, WDR91, WSB1, YARS2, YIPF3, YPEL5, ZC2HC1A, ZC3H13, ZDHHC9, ZMYND12, ZMYND15, ZRANB3
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| Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics.
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| Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W.
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| Genome Res 10(5):703-13. 2000
|