GENE DATABASE
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DNA type
functioning gene
cluster
breakpoint
like sequence
chromosome region
fragile site
pseudogene
locus control region
virus associated
anonymous DNA
EST
protein category
adaptor
adhesion
antigen
antioncogene
chaperone/stress
DNA associated
enzyme
immunity/defense
motor/contractile
protooncogene
receptor
receptor nuclear
receptor membrane
regulatory
secretory
RNA associated
signaling
sign. hormone
sign. neurotransmitter
sign. cytokine
sign. growth factor
storage
structural protein
transcription factor
transport
transport carrier
transport channel
unknown/unspecified
location
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
X
Y
Mitochondria
p
q
DNA characteristics
special feature
organized in
arranged in tandem
opposite orientation
- head to head
- tail to tail
gene in gene
- overlapping
- antisense
component of a cluster
escaping inactivation
physical property
size in KB
=
>=
<=
number of exons
=
>=
<=
peculiar motif
viral sequence
LTR
gag
env
pol
repetitive sequence
ALU
LINE
triplet
other
regulatory sequence
sequence
promoter
promoter CAAT box
promoter TATA box
LCR
alternative promoter
SAR/MAR
HSS hypertensive site
imprinting domain
CpG/HTF
binding site
enhancer
silencer
transcription factor
hormone
metal/iron
cAMP
HRE
RNA characteristics
RNA type
messenger
untranslated
untranslated transfer
untranslated ribosomal
untranslated small nuclear RNA
untranslated small cytoplasmic
alternative transcripts by
splicing
initiation site
polyadenylation site
codon stop
truncated
expression/subcellular localisation
expression
expression
ubiquitous
widely
restricted
spatial expression
system
organ step 1
organ step 2
organ step 3
expression level
an organ
Cardiovascular
Digestive
Endocrine
Gustatory (taste)
Hearing/Equilibrium
Lymphoid/Immune
Nervous
Olfactory (smell)
Reproductive
Respiratory
Skeleton
Skin/Tegument
Urinary
Visual
highly
predominantly
specific
moderately
lowly
system
tissue step 1
tissue step 2
tissue step 3
tissue step 4
a tissue
Blood / hematopoietic
Connective
Epithelial
Membrane
Muscular
Nervous
Touch
system
cell step 1
a cell
Blood/Hematopoietic
Cardiovascular
Digestive
Endocrine
Gustatory
Hearing / Equilibrium
Lymphoid
Lymphoid/Immune
Muscular
Nervous
Olfactory
Reproductive
Respiratory
Skeleton
Skin/Tegument
Urinary
Visual
spatial expression
a cell lineage
a fluid
cells lines
temporal expression
life period
embryonary
fetal
perinatal
neonatal
growth/childhood
puberty
pregnancy
ageing
cell cycle or cell life
imprinting
imprinting
maternally
paternally
extra or subcellular localization
extracellular
intracellular
plasma membrane
PROTEIN characteristics
genes with
physical property
acidic
basic
fibrous/insoluble
globular/soluble
instable
other
hydrophilic
hydrophobic
amphiphilic
isoforms precursor
conjugating
flavoprotein
glycoprotein
hemoprotein
lipoprotein
riboprotein
phosphoprotein
metalloprotein
other
polymerizing
homomer
heteromer
monomer
dimer
trimer
tetramer
pentamer
hexamer
heptamer
octamer
polymer
oligomer
aggregate
complex
homolog to:
interspecies
c.elegans
drosophila
murine
rattus
yeast
other
intraspecies
member of a family
function
interaction
DNA
RNA
protein
small molecule
cell & other
regulation
activated/induced
inhibited/repressed
other
complex
motifs/domains
cellular and physiological process
cell cycle
nucleotide
cell organobiogenesis
cell communication/motility
cell life
protein
cell migration
physiological process
behavioral
cardiovascular
circadian
coagulation/hemostasis
detoxification
development
digestion/absorption
excretion
homeostasis
immunity/defense
inflammation
locomotion
nervous system
ossification
respiration
reproduction/sex
secretion
transport
extracellular
cell to cell
facilitated diffusion
active
exocytosis
endocytosis
cellular trafficking
mitochondrial
electron
pathway
metabolism
signaling
alcohol
amine
aminoacid
carbohydrate
cofactor
energetic
drug
hormone
lipid/protein
metal
monocarbon
nucleic
organic acid
porphyrin/heme
purine/pyrimidine
vitamin
other
hormonal
neurotransmission
signal transduction
sensory transduction
sensory transduction - hearing
sensory transduction - olfaction
sensory transduction - tact
sensory transduction - taste
sensory transduction - vision
PATHOLOGY
genes with
type
constitutional
tumoral
susceptibility to
variant & polymorphism
candidate gene
single nucleotide polymorphism
insertion/deletion
repeat
other
due to anomaly
gene
germinal mutation
somatic mutation
fusion
mosaic
imprinting
chromosome
amplification
deletion
loss of heterogeneity
loss of imprinting
translocation
inversion
insertion
due to dysregulation of protein
expression
low
over
null
other
function
gain of function
loss of function
dominant negative
chimeric protein
described in animal
or cellular model