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FLASH GENE
Symbol TFCP2 contributors: mct/ - updated : 24-12-2009
HGNC name transcription factor CP2
HGNC id 11748
Location 12q13.13      Physical location : 51.487.540 - 51.566.926
Synonym name
  • alpha-globin transcription factor
  • SAA3 enhancer factor
  • transcription factor LSF
  • Synonym symbol(s) CP2, LBP1C, LSF, SEF, LBP-1C, TFCP2C, LSF1D
    DNA
    TYPE functioning gene
    STRUCTURE 78.04 kb     15 Exon(s)
    10 Kb 5' upstream gene genomic sequence study
    MAPPING cloned Y linked N status confirmed
    Physical map
    SMARCD1 12q13.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 GPD1 12q13.1 glycerol-3-phosphate dehydrogenase 1 (soluble) MGC14288 12q13.12 hypothetical protein MGC14288 LASS5 12q13.12 LAG1 longevity assurance homolog 5 (S. cerevisiae) EPLIN 12q13 LAG1 longevity assurance homolog 5 (S. cerevisiae) LOC121006 12q13.12 hypothetical protein LOC121006 LOC113251 12q13.12 c-Mpl binding protein FLJ34278 12q13.12-q13.13 hypothetical protein FLJ34278 ATF1 12q13.1-q13.2 activating transcription factor 1 MGC57341 12q13.13 hypothetical protein MGC57341 DKFZP586A0522 12q13.13 DKFZP586A0522 protein SLC11A2 12q13.1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 HCCR1 12q13.13 cervical cancer 1 protooncogene C12orf22 12q13.11-q13.12 chromosome 12 open reading frame 22 TFCP2 12q13.1 transcription factor CP2 POU6F1 12q13.1 POU domain, class 6, transcription factor 1 DAZAP2 2q33-q34 DAZ associated protein 2 LOC57228 12q13.13 hypothetical protein from clone 643 BIN2 4q22.1 bridging integrator 2 ELA1 12q13 elastase 1, pancreatic GALNT6 12q13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) LOC387857 12 LOC387857 SLC4A8 12q13 solute carrier family 4, sodium bicarbonate cotransporter, member 8 SCN8A 12q13 sodium channel, voltage gated, type VIII, alpha FLJ33996 12q13.13 hypothetical protein FLJ33996 DKFZp686O1689 12q13.13 hypothetical protein DKFZp686O1689 ACVRL1 12q13 activin A receptor type II-like 1 ACVR1B 12q13 activin A receptor, type IB
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    15 - 3715 - 502 - 2008 18629613
    15 - 3712 - 501 - -
    14 - 3559 - 450 - -
    EXPRESSION
    Type ubiquitous
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Cardiovascularheart   highly
    Digestivemouthtongue  highly
    Urinarykidney   highly
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
    mono polymer homomer , dimer
    HOMOLOGY
    interspecies homolog to Drosophila transcription factor Elf-1/NTF-1
    intraspecies homolog to UBP1
    Homologene
    FAMILY
  • grh/CP2 family
  • CP2 subfamily
  • CATEGORY DNA associated , transcription factor
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,cytoplasm,cytosolic
    text exclusively localized in the cytosol
    basic FUNCTION
  • possible trancriptional regulator of immunodeficiency virus type 1
  • recognizing several distinct binding motifs by virtue of employing different regions, thus being able to interact with and regulate many cellular partners
  • playing an important role in the regulation of erythroid genes
  • exhibiting some tissue- or stage-specific activation toward certain genes such as globin in red blood cells and interleukin-4 in T helper cells
  • critical regulator of erythroid gene expression
  • role in fibronectin expression
  • CELLULAR PROCESS nucleotide, transcription, regulation
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
  • dimerizing with NFE2 to form the stage selector protein complex
  • heterodimerization with UBP1 is necessary for nuclear localization
  • INTERACTION
    DNA
    RNA
    small molecule
    protein
  • GSKB, APBB1 (FE65) and others involved in the inflammatory response
  • two HXPR motif-containing proteins REST and YY1 were able to bind TFCP2
  • interacting with RNF2 and PHB2 (RNF2 and PHB2 modulate the TFCP2-mediated transcriptional pathway)
  • TFCP2 is an essential transcription factor for SRY expression regulation
  • cell & other
    REGULATION
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Susceptibility to Alzheimer disease
    Variant & Polymorphism SNP 3'utr G>A protective effect of A allele
    Candidate gene
    Marker
    Therapy target
    ANIMAL & CELL MODELS