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FLASH GENE
Symbol TCFL5 contributors: npt/ - updated : 12-09-2007
HGNC name transcription factor-like 5 (basic helix-loop-helix)
HGNC id 11646
Location 20q13.3      Physical location : 61.472.467 - 61.493.115
Synonym name
  • HPV-16 E2 binding protein 1
  • Cha transcription factor
  • Synonym symbol(s) E2BP-1, Figlb, CHA, MGC46135
    DNA
    TYPE functioning gene
    STRUCTURE 20.65 kb     6 Exon(s)
    10 Kb 5' upstream gene genomic sequence study
    MAPPING cloned Y linked N status provisional
    Physical map
    RPS21 20q13.3 ribosomal protein S21 C20orf150 20q13.33 chromosome 20 open reading frame 150 C20orf151 20q13.33 chromosome 20 open reading frame 151 GATA5 20q11.21-q11.22 GATA binding protein 5 RPL7P3 20q13.33 ribosomal protein L7 pseudogene 3 C20orf166 20q13.33 chromosome 20 open reading frame 166 FLJ30313 20q13.33 hypothetical protein FLJ30313 LOC388805 20 LOC388805 FLJ32154 20q13.33 hypothetical protein FLJ32154 SLCO4A1 20q13.33 solute carrier organic anion transporter family, member 4A1 NTSR1 20q13 neurotensin receptor 1 (high affinity) LOC391261 20 similar to putative glycine-rich protein C20orf20 20q13.33 chromosome 20 open reading frame 20 OGFR 20q13 opioid growth factor receptor COL9A3 20q13.3 collagen, type IX, alpha 3 TCFL5 20q13.3 transcription factor-like 5 (basic helix-loop-helix) C20orf143 20q13.33 chromosome 20 open reading frame 143 ARF4P2 20q13.33 ADP-ribosylation factor 4 pseudogene 2 C20orf158 20q13.33 chromosome 20 open reading frame 158 DATF1 20q13.33 death associated transcription factor 1 C20orf11 20q13.33 chromosome 20 open reading frame 11 C20orf59 20q13.33 chromosome 20 open reading frame 59 LOC388806 20 hypothetical gene supported by AK128846 LOC343565 20q13.33 similar to VsaA -like protein C20orf51 20q13.33 chromosome 20 open reading frame 51 C20orf21 20q13.33 chromosome 20 open reading frame 21 BIRC7 20q13.3 baculoviral IAP repeat-containing 7 (livin) C20orf58 20q13.33 chromosome 20 open reading frame 58
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    6 - 2474 52.6 500 - -
    EXPRESSION
    Type
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Cardiovascularheart    
    Nervousbrain    
    Reproductivemale systemtestis   
     male systemprostate   
    Respiratorylung    
    Urinarykidney    
    tissue
    SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
    Muscularstriatumskeletal  
    cell lineage specifically of primary spermatocytes
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES basic
    STRUCTURE
    motifs/domains
  • a basic helix-loop-helix (HLH) motif
  • HOMOLOGY
    Homologene
    FAMILY
  • basic helix-loop-helix (BHLH) family of transcription factors
  • CATEGORY transcription factor
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,nucleus
    basic FUNCTION
  • regulating transcription associated with growth and differentiation
  • CELLULAR PROCESS cell life, differentiation
    cell life, proliferation/growth
    nucleotide, transcription, regulation
    PHYSIOLOGICAL PROCESS development
    text spermatogenesis
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA binding
    RNA
    small molecule
    protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS