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FLASH GENE
Symbol SS18L2 contributors: KTN/npt - updated : 22/10/2008
HGNC name synovial sarcoma translocation gene on chromosome 18-like 2
HGNC id 15593
Location 3p21      Physical location : 42.632.297 - 42.636.490
Synonym name SYT homolog 2
Synonym symbol(s) KIAA-ISO
DNA
TYPE functioning gene
STRUCTURE 4.19 kb     3 Exon(s)
10 Kb 5' upstream gene genomic sequence study
regulatory sequence Promoter (CAAT box)
cytosine-phosphate-guanine/HTF
text structure a CAAT box and CpG islands suggesting that it is a housekeeping gene
MAPPING cloned Y linked N status confirmed
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
3 - 822 8.7 77 - -
EXPRESSION
Type
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Digestivepancreas exocrine   moderately
Endocrineparathyroid   predominantly
Lymphoid/Immunelymph node   moderately
Nervousnerve   moderately
tissue
SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
Blood / hematopoieticbone marrow  highly
Connectivebone  moderately
cell lineage
cell lines
fluid/secretion moderately in blood
at STAGE
physiological period fetal
Text highly in umbilical cord
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
HOMOLOGY
interspecies homolog to dog SS18L2 (94.8 pc)
homolog to murine Deb1 (87 pc)
homolog to chicken SS18L2 (80.5 pc)
intraspecies homolog to SS18
Homologene
FAMILY
  • SS18 family
  • CATEGORY unknown/unspecified
    SUBCELLULAR LOCALIZATION
    basic FUNCTION unknown
    CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS