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FLASH GENE
Symbol SS18L1 contributors: - updated : 28-01-2004
HGNC name synovial sarcoma translocation gene on chromosome 18-like 1
HGNC id 15592
Location 20q13.2-q13.3      Physical location : 60.718.821 - 60.757.568
Genatlas name calcium-responsive transactivator
Synonym name SYT homolog 1
Synonym symbol(s) KIAA0693, CREST
DNA
TYPE functioning gene
STRUCTURE 38.00 kb     11 Exon(s)
10 Kb 5' upstream gene genomic sequence study
regulatory sequence Promoter
cytosine-phosphate-guanine/HTF
MAPPING cloned Y linked N status provisional
Physical map
CDH4 20q13.3 cadherin 4, type 1, R-cadherin (retinal) FLJ22202 20q13.33 hypothetical protein FLJ22202 TAF4 20q13.3 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa C20orf40 20q13.33 chromosome 20 open reading frame 40 PSMA7 20q133 proteasome (prosome, macropain) subunit, alpha type, 7 SS18L1 20q13.2-q13.3 synovial sarcoma translocation gene on chromosome 18-like 1 GTPBP5 20 GTP binding protein 5 (putative) HRH3 20q13.3 histamine receptor H3 OSBPL2 20q13.3 oxysterol binding protein-like 2 ADRM1 20q13.33 adhesion regulating molecule 1 LAMA5 20q13.2-q13.3 laminin, alpha 5 RPS21 20q13.3 ribosomal protein S21 C20orf150 20q13.33 chromosome 20 open reading frame 150 C20orf151 20q13.33 chromosome 20 open reading frame 151 GATA5 20q11.21-q11.22 GATA binding protein 5 RPL7P3 20q13.33 ribosomal protein L7 pseudogene 3 C20orf166 20q13.33 chromosome 20 open reading frame 166 FLJ30313 20q13.33 hypothetical protein FLJ30313 LOC388805 20 LOC388805 FLJ32154 20q13.33 hypothetical protein FLJ32154 SLCO4A1 20q13.33 solute carrier organic anion transporter family, member 4A1 NTSR1 20q13 neurotensin receptor 1 (high affinity) LOC391261 20 similar to putative glycine-rich protein
RNA
TRANSCRIPTS type messenger
EXPRESSION
Type
constitutive of
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Cardiovascularheart    
Digestiveliver    
Hearing/Equilibriumearinnercochlea  
Nervousbrainforebraincerebral cortex highly
 braindiencephalonhypothalamus  
Reproductivefemale systemovary  highly
 male systemtestis   
cell lineage
cell lines
fluid/secretion
at STAGE
physiological period embryo, pregnancy
Text placenta,developing brain
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • SYT Nterminal homology domain
  • a QPGY domain at the C terminus ,rich in glutamine, proline, glycine and tyrosine,acting as a CBP-binding domain
  • HOMOLOGY
    interspecies homolog to murine Syt
    intraspecies homolog to ss18
    Homologene
    FAMILY calcium-responsive transcription coactivator family
    CATEGORY regulatory
    SUBCELLULAR LOCALIZATION
    basic FUNCTION
  • may be activating transcription when coupled to a DNA-binding domain
  • CBP-interacting protein playing a central role in regulating development of cortical dendrites
  • CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein SMARCF1 and SMARCA4
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Susceptibility
    Variant & Polymorphism
    Candidate gene
    Marker
    Therapy target
    ANIMAL & CELL MODELS