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FLASH GENE
Symbol SMARCD1 contributors: mct - updated : 05-10-2013
HGNC name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
HGNC id 11106
Location 12q13.1      Physical location : 50.478.982 - 50.494.493
Synonym name
  • BRG1 (brm/SWI2-related gene 1) associated factor 60A
  • SWI/SNF complex 60 kDa subunit A
  • SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d1
  • Swp73-like protein; chromatin remodeling complex BAF60A subunit
  • Synonym symbol(s) BAF60A, CRACD1, Rsc6p
    DNA
    TYPE like-sequence
    STRUCTURE 15.00 kb     13 Exon(s)
    10 Kb 5' upstream gene genomic sequence study
    MAPPING cloned Y linked   status provisional
    Map cen - D12S85 - D12S361 - SMARCD1 - D12S325 - D12S312 - SMARCC2 - D12S1691 - D12S104 - D12S329 - qter
    Authors Ring (98)
    Physical map
    K-ALPHA-1 12q12-q14.3 hypothetical protein MGC57341 TUBA3 12q12-12q14.3 hypothetical protein MGC57341 TUBA6 12q12-q14 tubulin alpha 6 PRPH 12q12-q13 peripherin TROAP 12p11.1 trophinin associated protein (tastin) LOC338761 12q13.12 similar to C1q-related factor precursor FLJ13236 12q13.12 hypothetical protein FLJ13236 SPATS2 12q13.12 spermatogenesis associated, serine-rich 2 KCNH3 12q13 potassium voltage-gated channel, subfamily H (eag-related), member 3 MCRS1 12q13.1 microspherule protein 1 DKFZP434J0113 12q13.12 hypothetical protein DKFZp434J0113 HYPC 12q hypothetical protein DKFZp434J0113 FMNL3 12q13.12 formin-like 3 TEGT 12q12-q13 testis enhanced gene transcript (BAX inhibitor 1) KIAA1602 12q13.12 KIAA1602 protein LOC144233 12q13.12 hypothetical protein LOC144233 FAIM2 12q13 Fas apoptotic inhibitory molecule 2 AQP2 12q13.1 aquaporin 2 (collecting duct) AQP5 12q13 aquaporin 5 AQP6 12q13 aquaporin 6, kidney specific RACGAP1 12p11.1 Rac GTPase activating protein 1 ACCN2 12q12 amiloride-sensitive cation channel 2, neuronal SMARCD1 12q13.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 GPD1 12q13.1 glycerol-3-phosphate dehydrogenase 1 (soluble) MGC14288 12q13.12 hypothetical protein MGC14288 LASS5 12q13.12 LAG1 longevity assurance homolog 5 (S. cerevisiae) EPLIN 12q13 LAG1 longevity assurance homolog 5 (S. cerevisiae) LOC121006 12q13.12 hypothetical protein LOC121006 LOC113251 12q13.12 c-Mpl binding protein FLJ34278 12q13.12-q13.13 hypothetical protein FLJ34278 ATF1 12q13.1-q13.2 activating transcription factor 1 MGC57341 12q13.13 hypothetical protein MGC57341
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    - - 3431 - 515 - Assmann
    - - 3308 - 474 - Assmann
    EXPRESSION
    Type ubiquitous
    constitutive of
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Lymphoid/Immunethymus   highly
    Nervousnerve   highly
    Reproductivefemale systemuteruscervix highly
     male systemtestis  highly
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
  • an N-terminal fragment containing the p53-interacting region as well as small interfering RNA for baf60a inhibited the SWI/SNF complex-mediated transcriptional activity of p53
  • HOMOLOGY
    interspecies homolog to related to yeast SWP73
    homolog to yeast S.cerevisiae SWI/SNF related protein,Rsc6p
    Homologene
    FAMILY SWI/SNF family
    CATEGORY transcription factor
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,nucleus,nucleoplasm
    intracellular,nucleus,chromatin/chromosome
    text matrix associated
    basic FUNCTION
  • actin-dependent regulator of chromatin structure
  • possesses at least two interaction surfaces, one for NR3C1 and SMARCA4 and a second for SMARCC1 and SMARCC2
  • may provide another critical and direct link between nuclear receptors and the BRG1 complex that is required for promoter recruitment and subsequent chromatin remodeling
  • likely key component of the transcriptional control in cardiac progenitors
  • CELLULAR PROCESS nucleotide, chromatin organization
    nucleotide, transcription
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component component of the chromatin remodeling complex
    INTERACTION
    DNA
    RNA
    small molecule
    protein
  • interacting with FEZ1
  • interacting with TNIP2 (nuclear TNIP2 defines a novel transcriptional coactivator and acts presumably by recruiting a chromatin-remodeling complex to the site of the target gene)
  • interacting with the tetramerization domain of p53
  • CHFR interacts with SMARCA4, SMARCB1, and SMARCD1 of the SWI/SNF-like BAF complex and ubiquitinates them to target for degradation through a proteasome-mediated pathway, and SMARCC1 stabilizes these components by blocking their interaction with CHFR
  • TBX1 interacts with, and probably recruits a specific subunit of, the BAF complex (SMARCD1) as well as histone methylases to activate or enhance transcription, enhancing SMARCD1 occupation at the WNT5A gene and its H3K4 monomethylation status
  • SMARCA4, SMARCB1, and SMARCD1, but not SMARCC1, are the substrates of CHFR for ubiquitination
  • cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS