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FLASH GENE
Symbol PPM1A contributors: mct - updated : 30-05-2013
HGNC name protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform
HGNC id 9275
Location 14q23.1      Physical location : 60.712.469 - 60.765.803
Synonym symbol(s) PP2CA, PP2C-ALPHA, PP2Calpha
EC.number 3.1.3.16
DNA
TYPE functioning gene
STRUCTURE 53.34 kb     6 Exon(s)
10 Kb 5' upstream gene genomic sequence study
MAPPING cloned Y linked N status confirmed
Physical map
RBBP1 14q22.3 retinoblastoma binding protein 1 LOC387990 14 similar to TIMM9 TIMM9 14q22.3-q24 translocase of inner mitochondrial membrane 9 homolog (yeast) KIAA0586 14q23.1 KIAA0586 HSBP1P1 14 heat shock factor binding protein 1 pseudogene 1 HNRPCP 14 heterogeneous nuclear ribonucleoprotein C pseudogene DACT1 14q22.3 dapper homolog 1, antagonist of beta-catenin (xenopus) LOC387991 14 similar to ribosomal protein L31 LOC390482 14 similar to Aldo-keto reductase family 1, member B1 PPIAP5 14 peptidylprolyl isomerase A (cyclophilin A) pseudogene 5 DAAM1 14q22.3 dishevelled associated activator of morphogenesis 1 GPR135 14q23.1 G protein-coupled receptor 135 FLJ25436 14q23.1 hypothetical protein FLJ25436 C14orf100 14q22.3 chromosome 14 open reading frame 100 RTN1 14q21-q22 reticulon 1 FLJ46156 14q23.1 FLJ46156 protein C14orf135 14q23.1 chromosome 14 open reading frame 135 DHRS7 14q23.1 dehydrogenase/reductase (SDR family) member 7 PSMA3P 14 proteasome (prosome, macropain) subunit, alpha type, 3 pseudogene PPM1A 14q22.3-q23.1 protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform RBM8B 14q22.1-q22.3 RNA binding motif protein 8B pseudogene C14orf39 14q23.1 chromosome 14 open reading frame 39 LOC390483 14 similar to sal-like 4 SIX6 14q22.3-q23 sine oculis homeobox homolog 6 (Drosophila) LOC387992 14 LOC387992 SIX1 14q22-q23 sine oculis homeobox homolog 1 (Drosophila) SIX4 14q23 sine oculis homeobox homolog 4 (Drosophila) MNAT1 14q23 menage a trois 1 (CAK assembly factor) MAD2L1P 14 MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene SRMP2 14 spermidine synthase pseudogene 2 SLC38A6 14q23.1 solute carrier family 38, member 6 LOC161291 14q23.1 hypothetical protein LOC161291 PRKCH 14q22-q23 protein kinase C, eta HIF1A 14q21-q24 hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) SNAPC1 14q22 small nuclear RNA activating complex, polypeptide 1, 43kDa LOC122867 14q23.1 similar to cytochrome c oxidase subunit IV (COXIV) pseudogene (E.C. 1.9.3.1) MOCS3P 14 molybdenum cofactor synthesis 3 pseudogene SYT14L 14q23.2 synaptotagmin XIV-like LOC390484 14 similar to ATP synthase alpha subunit
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
6 splicing 8210 42.3 382 - 2003 12514180
  • encoding the same isoform as the one encoded by variant 3
  • 6 exons
  • 4 splicing 4334 35.8 324 in brain 2003 12514180
  • 4 exons
  • containing an extra segment within the 5' UTR and having a different 3' region, which includes a part of the coding region as compared to variant 1
  • 6 splicing 8175 - 455 - 2003 12514180
  • 6 exons
  • differing in the 5' UTR compared to variant 1
  • encoding the same isoform than variant 1
  • EXPRESSION
    Type
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Cardiovascularheart    
    Digestiveliver    
    Endocrineneuroendocrinepituitary  predominantly
     pancreas    
    Hearing/Equilibriumear   highly
    Lymphoid/Immunelymph node   moderately
    Nervousnerve   moderately
    Respiratorylung    
    tissue
    SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
    Blood / Hematopoieticbone marrow   
    Connectivebone  moderately
    Muscularstriatumskeletal  
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    physiological period pregnancy
    Text placenta
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
  • a catalytic domain
  • secondary structure
  • a catalytic domain composed of a central beta sandwich that binds 2 manganese ions, which is surrounded by alpha helices
  • mono polymer monomer
    HOMOLOGY
    interspecies ortholog to rattus Ppm1a (99pc)
    ortholog to murine Ppm1a (98.2pc)
    Homologene
    FAMILY
  • PP2C family of Ser/Thr protein phosphatases
  • metal-dependent serine/threonine protein phosphatase family
  • CATEGORY enzyme
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,cytoplasm,cytosolic
    intracellular,nucleus,nucleoplasm
    basic FUNCTION
  • acting as a negative regulator of cell stress response pathways
  • negatively regulating the activities of MAP kinases and MAP kinase kinases
  • inhibiting the activation of p38 and JNK kinase cascades induced by environmental stresses
  • playing an important role in the regulation of receptors and channels
  • directly dephosphorylating Smad2 and Smad3 to limit their activation which plays a critical role in terminating TGFbeta signaling
  • involved in positive regulation of I-kappaB kinase/NF-kappaB cascade
  • inhibiting cell growth
  • activating the p53 pathway
  • might contribute to secretory cell function
  • PPM1A and PPM1B play an important role in the termination of TNF-mediated NF-kappaB activation through dephosphorylating and inactivating IKBKB
  • phosphatase which dephosphorylates and inactivates a broad range of substrates, including TGFB1, MAP kinases, MAPK14 and JNK kinase cascades, and is involved in tumor suppression
  • plays a critical role in the regulation of normal placentation by inhibiting trophoblast migration and invasion
  • critical role of PPM1A in maximizing exporter activity of RANBP3 for efficient termination of canonical TGFB1 signalling
  • plays a role in the differentiation and survival processes of nerve cells
  • might have an important role in oocyte maturation
  • represses HIV-1 gene expression by inhibiting CDK9 T-loop phosphorylation, thus reducing the amount of active CDK9 available for recruitment to the viral LTR
  • N-myristoylation of PPM1A and PPM1B plays a key role in recognition of their physiological substrates in cells
  • CELLULAR PROCESS cell cycle, progression
    cell life, proliferation/growth
    PHYSIOLOGICAL PROCESS
    text
  • involved in cell cycle control
  • PATHWAY
    metabolism
    signaling signal transduction
    a component
    INTERACTION
    DNA
    RNA
    small molecule metal binding,
  • Mg2+ (2 ions per subunit)
  • Mn2+ (2 ions per subunit)
  • protein
  • GRM3 (C terminal cytoplasmic tail)
  • PPM1A and PPM1B, are IKBKB phosphatases
  • regulates the nuclear export of SMAD2/3 through targeting nuclear exporter RANBP3
  • directly interacted with and dephosphorylated RANBP3 at Ser 58
  • cell & other
    REGULATION
    Other N-myristoylated and this modification is essential for its ability to dephosphorylate the alpha subunit of AMPK in cells
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Other morbid association(s)
    TypeGene ModificationChromosome rearrangementProtein expressionProtein Function
    tumoral     --low  
    in hydatidiform moles compared with that during normal pregnancy
    Susceptibility
    Variant & Polymorphism
    Candidate gene
    Marker
    Therapy target
    ANIMAL & CELL MODELS