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FLASH GENE
Symbol PHF3 contributors: mct - updated : 06-12-2014
HGNC name PHD finger protein 3
HGNC id 8921
Location 6q12      Physical location : 64.356.430 - 64.424.405
Synonym symbol(s) KIAA0244
DNA
TYPE functioning gene
STRUCTURE 78.71 kb     15 Exon(s)
10 Kb 5' upstream gene genomic sequence study
MAPPING cloned Y linked N status provisional
Physical map
SLM1 LOC391937 6 similar to keratin 8, type II cytoskeletal - human FKBP1C 6q12 FK506 binding protein 1C LOC391938 6 similar to chromosome 15 open reading frame 2 GLULD1 6pter-q22.33 glutamate-ammonia ligase (glutamine synthase) domain containing 1 LOC389403 6 LOC389403 LOC391939 6 similar to eukaryotic translation elongation factor 1 beta 2; eukaryotic translation elongation factor 1 beta 1 LOC340159 6q12 similar to 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X polypeptide) PTP4A1 6q12 protein tyrosine phosphatase type IVA, member 1 LOC389404 6 hypothetical gene supported by U21138; NM_000661 PHF3 6q12 PHD finger protein 3 LOC346004 6q12 similar to dJ22I17.2 (novel protein with EGF-like and laminin G domains) LOC389405 6 similar to ENSANGP00000009924 LOC391940 6 similar to TADA1 protein LOC389406 6 similar to notch-like protein LOC389407 6 similar to KIAA0663 gene product EGFL11 6q12 EGF-like-domain, multiple 11 MCART3P 6q12 mitochondrial carrier triple repeat 3 pseudogene ADH5B 6q12 alcohol dehydrogenase 5B NUFIP1P 6q12 nuclear fragile X mental retardation protein interacting protein 1 pseudogene
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
15 - 6947 - 2039 - -
- - 8501 - 1951 - -
- - 3014 - 736 - -
EXPRESSION
Type ubiquitous
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Digestivemouth   moderately
 pharynx   highly
Endocrineneuroendocrinepituitary  highly
Hearing/Equilibriumearinnercochlea highly
Lymphoid/Immunelymph node   moderately
Nervousbrain    
 nerve   moderately
Reproductivefemale systembreastmammary gland moderately
Respiratoryrespiratory tracttrachea  moderately
Urinarybladder   moderately
tissue
SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
Blood / hematopoieticbone marrow  moderately
Connectivebone  moderately
Muscular   moderately
cell lineage
cell lines
fluid/secretion
at STAGE
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • N-terminal PHD domain,
  • a TFIIS domain
  • a proline-rich region
  • two bipartite nuclear localization signals
  • a central TLD domain,
  • C-terminal SPOC domain
  • HOMOLOGY
    interspecies homolog to yeast Bye1
    homolog to rattus Phf3 (79.7 pc)
    homolog to murine Phf3 (79.6 pc)
    Homologene
    FAMILY PHD finger gene family
    CATEGORY transcription factor , tumor suppressor
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,nucleus
    basic FUNCTION
  • involved in the regulation of transcription, DNA-dependent
  • PHF3 and/or PTP4A1 might play a functional role in alcohol dependence
  • once Pol II is engaged into elongation, PHF3 and DIDO1 binds directly to the transcriptional machinery, modulating its progression along the gene
  • CELLULAR PROCESS nucleotide, transcription, regulation
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule metal binding,
  • Zn2+
  • protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Other morbid association(s)
    TypeGene ModificationChromosome rearrangementProtein expressionProtein Function
    tumoral     --low  
    expression significantly reduced or lost in glioblastomas, glioblastoma cell lines, anaplastic astrocytomas, and astrocytomas
    Susceptibility
    Variant & Polymorphism
    Candidate gene
    Marker
    Therapy target
    ANIMAL & CELL MODELS