Selected-GenAtlas references SOURCE GeneCards NCBI Gene Swiss-Prot Ensembl
HGNC UniGene Nucleotide OMIM UCSC
Home Page
FLASH GENE
Symbol COL27A1 contributors: - updated : 18-02-2004
HGNC name collagen, type XXVII, alpha 1
HGNC id 22986
Location 9q33.1      Physical location : 116.918.230 - 117.072.974
Synonym symbol(s) KIAA1870, MGC11337, FLJ11895
DNA
TYPE functioning gene
STRUCTURE 154.00 kb     63 Exon(s)
10 Kb 5' upstream gene genomic sequence study
motif repetitive sequence   other
text structure a MIR repetitive element in the 5' UTR
MAPPING cloned Y linked N status provisional
RNA
TRANSCRIPTS type messenger
EXPRESSION
Type
constitutive of
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Digestivestomach    
 tooth    
Reproductiveovary    
Respiratorylung    
Skin/Tegumentskin    
tissue
SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
Connectivecartilage   
Muscularstriatumskeletal  
cell lineage epithelial cell layers of the organs above
cell lines
fluid/secretion
at STAGE
physiological period fetal
Text pancreas, brain
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • a N-terminal thrombospondin N-terminal-like (TSPN) domain
  • a major triple helical domain
  • a C-terminal non-collagenous propeptide domain
    • mono polymer homomer , heteromer , trimer
    HOMOLOGY
    interspecies homolog to murine Col27a1
    intraspecies homolog to COL24A1
    Homologene
    FAMILY collagen family
    CATEGORY structural protein
    SUBCELLULAR LOCALIZATION extracellular
    text extracellular matrix
    CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component major component of the descemet's membrane (basement membrane) of corneal endothelial cells
    INTERACTION
    DNA
    RNA
    small molecule
    protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS