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FLASH GENE
Symbol TRA2A contributors: npt - updated : 18-04-2005
DNA
TYPE functioning gene
STRUCTURE 27.00 kb     8 Exon(s)
10 Kb 5' upstream gene genomic sequence study
MAPPING cloned Y linked N status provisional
Physical map
LOC392751 7 LOC392751 LOC286031 8p23.1 hypothetical protein LOC286031 LOC392752 7 similar to seven transmembrane helix receptor LOC392753 7 similar to olfactory receptor GA_x6K02T2PVTD-14054886-14053957 OCM 7p13-p11 oncomodulin HYAL4 7q31.3 hyaluronoglucosaminidase 4 SBBI26 7p15.3 SBBI26 protein LOC392642 7 similar to Neuronal protein 3.1 (p311 protein) LOC392643 7 hypothetical gene supported by BC026177 TRA2A 7p15.3 transformer-2 alpha KPI2 7q22.1 transformer-2 alpha NUPL2 7p15 nucleoporin like 2 SPAM1 7q31.3 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) LOC392644 7 hypothetical gene supported by BC022025; NM_003993 GPNMB 7p15 glycoprotein (transmembrane) nmb LOC90693 7p15.3 alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetyl-glucosaminyltransferase-like MIST1 7q22.1 class II bHLH protein MIST1 DKFZP434B0335 7q22.1 DKFZP434B0335 protein C7orf30 7p15.3 chromosome 7 open reading frame 30 IMP-3 7p11 IGF-II mRNA-binding protein 3 LOC392981 7 similar to RIKEN cDNA 6332401O19 gene LOC340277 BRI3 7q22.1 brain protein I3 STK31 7p15.3 serine/threonine kinase 31 LOC55971 7q22.1 insulin receptor tyrosine kinase substrate LOC389473 7 similar to Neuronal protein 3.1 (p311 protein) MGC27348 7p15.3 similar to ribosomal protein S2; 40S ribosomal protein S2 TRA2A 7p15.3 transformer-2 alpha LOC346404 7p15.3 similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) (HuHP68) LOC90693 7p15.3 alpha-1,3(6)-mannosylglycoprotein beta-1,6-N-acetyl-glucosaminyltransferase-like LOC340277 NPTX2 7q21.3-q22.1 neuronal pentraxin II STK31 7p15.3 serine/threonine kinase 31 LOC392982 7 similar to RIKEN cDNA 1500011L16 LOC392781 7 similar to 40S ribosomal protein S2
RNA
TRANSCRIPTS type messenger
identificationnb exonstypebpproduct
ProteinkDaAAspecific expressionYearPubmed
- splicing 1807 32 282 - Dauwalder
- splicing - 12 113 - Dauwalder
EXPRESSION
Type ubiquitous
constitutive of
   expressed in (based on citations)
organ(s)
SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
Cardiovascularheart   highly
Digestivemouthtongue  highly
 pancreas exocrine   predominantly
Lymphoid/Immunelymph node   highly
 spleen   predominantly
 thymus   highly
Respiratorylung   highly
 respiratory tractlarynx  highly
cell lineage
cell lines
fluid/secretion blood
at STAGE
PROTEIN
PHYSICAL PROPERTIES
STRUCTURE
motifs/domains
  • a RNA recognition motif (RRM) domain
  • RS domains
  • conjugated PhosphoP
    HOMOLOGY
    Homologene
    FAMILY
  • splicing factor SR family
  • CATEGORY regulatory , RNA associated
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,nucleus
    basic FUNCTION
  • participating in the control of pre-mRNA splicing
  • CELLULAR PROCESS nucleotide, RNA splicing
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA sequence-specific RNA-binding (sequence containing GAA repeats)
    small molecule
    protein
  • A3 enhancer proteins SRp75, SRp55, SRp40 and SRp30
  • cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS