Selected-GenAtlas references | SOURCE | GeneCards | NCBI Gene | Swiss-Prot | Ensembl |
HGNC | UniGene | Nucleotide | OMIM | UCSC |
Home Page |
FLASH GENE |
Symbol | PCDHGA6 | contributors: npt - updated : 16/10/2008 |
HGNC name | protocadherin gamma subfamily A, 6 |
HGNC id | 8704 |
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DNA |
TYPE | functioning gene |
SPECIAL FEATURE | arranged in tandem, component of a cluster |
text | component of PCDHG@, subfamily A |
STRUCTURE | 138.90 kb 4 Exon(s) |
10 Kb 5' upstream gene genomic sequence study |
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text structure | the first large exon corresponding to the variable region A6 of the gamma cluster encodes the N terminal extracellular transmembrane domains, the three small last exons corresponding the constant region of the gamma cluster encode the C terminal cytoplasmic domain (identical for each protein in the cluster) |
MAPPING | cloned | Y | linked | Y | status | provisional |
Map | cen - PCDHGA1 - PCDHGA2 - PCDHGA3 - PCDHGB1 - PCDHGA4 - PCDHGB2 - PCDHGA5 - PCDHGB3 - PCDHGA6 - PCDHGA7 - PCDHGB4 - PCDHGA8 - PCDHGB5 - PCDHGA9 - PCDHGB6 - PCDHGA10 - PCDHGB7 - PCDHGA11 - PCDHGA12 - PCDHGC3 - PCDHGC4 - PCDHGC5 - qter |
Authors | Wu (01) |
RNA |
TRANSCRIPTS | type | messenger |
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EXPRESSION |
Type | widely |
expressed in | (based on citations) | ||||||||||||||||||||
organ(s) |
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tissue |
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cells |
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cell lineage
cell lines
| fluid/secretion
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at STAGE |
PROTEIN |
PHYSICAL PROPERTIES
STRUCTURE
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motifs/domains
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conjugated | GlycoP |
isoforms | Precursor |
HOMOLOGY |
interspecies | homolog to murine Pcdhga6 protocadherin gamma subfamily A,6 |
intraspecies | homolog to cadherin |
Homologene |
FAMILY | |
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CATEGORY | adhesion , receptor membrane |
SUBCELLULAR LOCALIZATION | plasma membrane,junction |
text | integral membrane protein type I, localized at the synaptic junction |
basic FUNCTION |