Selected-GenAtlas references SOURCE GeneCards NCBI Gene Swiss-Prot Ensembl
HGNC UniGene Nucleotide OMIM UCSC
Home Page
FLASH GENE
Symbol CDRT1 contributors: - updated : 12-08-2004
HGNC name CMT1A duplicated region transcript 1
HGNC id 14379
Location 17p12      Physical location : 15.491.977 - 15.523.018
Synonym name Charcot-Marie-Tooth duplicated region transcript 1
Synonym symbol(s) HREP, SM25H2
DNA
TYPE functioning gene
SPECIAL FEATURE component of a cluster, opposite orientation
text
  • mapping centromeric to and partially within the CMT1AREPC
  • transcribed from the opposite strand of COX10 partial gene duplication
  • STRUCTURE 10.00 kb     5 Exon(s)
    text structure opposite orientation with COX10
    MAPPING cloned Y linked N status confirmed
    Physical map
    LOC146822 17p12 similar to CDRT15 protein LOC388338 17 LOC388338 HS3ST3B1 17p12-p11.2 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 LOC388339 17 similar to ribosomal protein LOC390765 17 similar to 60S ribosomal protein L23a LOC388340 17 LOC388340 PMP22 17p12-p11.2 peripheral myelin protein 22 TEKT3 17p12 tektin 3 FLJ36674 17p11.2 hypothetical protein FLJ36674 LOC201158 17p11.2 similar to CGI-148 protein C17orf1A 17p11 chromosome 17 open reading frame 1A CDRT1 17p12 CMT1A duplicated region transcript 1 TRIM16 17p11.2 tripartite motif-containing 16 ZNF286 17p11.2 zinc finger protein 286 LOC246719 17p11.2 ubiquitin carrier protein E2-EPF pseudogene MGC51025 7p11.2 hypothetical protein MGC51025 LOC147151 17p11.2 hypothetical LOC147151 IL6STP 17p11.2 interleukin 6 signal transducer (gp130, oncostatin M receptor) pseudogene MEIS3 17p11.1 Meis1, myeloid ecotropic viral integration site 1 homolog 3 (mouse) ADORA2B 17p11.2 adenosine A2b receptor FLJ20343 17p11.2 hypothetical protein FLJ20343 NCOR1 17-p11.2 nuclear receptor co-repressor 1 PIGL 17p12-p11.2 phosphatidylinositol glycan, class L p30 17p11.2 nuclear protein p30 UBB 17p12-p11.1 ubiquitin B TRPV2 17p11.2 transient receptor potential cation channel, subfamily V, member 2 MGC40157 17p11.2 hypothetical protein MGC40157 LOC388341 17 similar to Hypothetical protein LOC192976 ZNF287 17p11.2 zinc finger protein 287 LOC284045 17p11.2 hypothetical gene supported by NM_006275; BC006832; U30828; U30829; U30883 KIAA1349 17p11.2 KIAA1349 protein LOC390766 17 similar to Ribonuclease H1 (RNase H1) (Ribonuclease H type II) LOC147226 17p11.2 similar to yeast Upf3, variant A pseudogene LOC252841 17p11.2 signal recognition particle 68kD pseudogene
    RNA
    TRANSCRIPTS type messenger
    EXPRESSION
    Type
    constitutive of
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Cardiovascularheart    
    tissue
    SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
    Muscularstriatumskeletal  
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
    one potential N glycosylation site
    HOMOLOGY
    Homologene
    FAMILY
    CATEGORY unknown/unspecified
    SUBCELLULAR LOCALIZATION
    basic FUNCTION unknown
    CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein
    cell & other
    REGULATION
    ASSOCIATED DISORDERS
    ANIMAL & CELL MODELS