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FLASH GENE
Symbol NRGN contributors: mct - updated : 10-03-2020
HGNC name neurogranin (protein kinase C substrate, RC3)
HGNC id 8000
Location 11q24.2      Physical location : 124.609.828 - 124.617.102
Synonym name
  • calmodulin-binding protein
  • protein kinase C substrate
  • Synonym symbol(s) RC3, hng, Ng
    DNA
    TYPE functioning gene
    STRUCTURE 7.27 kb     4 Exon(s)
    10 Kb 5' upstream gene genomic sequence study
    regulatory sequence Promoter
    cytosine-phosphate-guanine/HTF
    text structure
  • thyroid hormone-responsive element in the first intron
  • TATA-less promoter
  • MAPPING cloned Y linked N status provisional
    RNA
    TRANSCRIPTS type messenger
    identificationnb exonstypebpproduct
    ProteinkDaAAspecific expressionYearPubmed
    4 - 1238 - 78 - 2018 29700597
    4 - 1235 - 78 - 2018 29700597
    EXPRESSION
    Type restricted
       expressed in (based on citations)
    organ(s)
    SystemOrgan level 1Organ level 2Organ level 3Organ level 4LevelPubmedSpeciesStageRna symbol
    Endocrineadrenal gland   highly
    Nervousbrainforebraincerebral cortex specific Homo sapiens
    Reproductivefemale systemovary   
    Visualeye   highly
    tissue
    SystemTissueTissue level 1Tissue level 2LevelPubmedSpeciesStageRna symbol
    Connectivebone   
    Nervousperipherous   
    cells
    SystemCellPubmedSpeciesStageRna symbol
    Nervousneuron Homo sapiens
    cell lineage
    cell lines
    fluid/secretion
    at STAGE
    PROTEIN
    PHYSICAL PROPERTIES
    STRUCTURE
    motifs/domains
  • one collagen-like domain
  • one IQ domain
  • HOMOLOGY
    interspecies homolog to rattus Nrgn (96.2pc)
    homolog to murine Nrgn (96.2pc)
    Homologene
    FAMILY
  • neurogranin family
  • CATEGORY signaling neurotransmitter
    SUBCELLULAR LOCALIZATION     intracellular
    intracellular,cytoplasm,organelle,mitochondria
    intracellular,cytoplasm,organelle,membrane
    intracellular,cytoplasm,cytosolic
    intracellular,nucleus
    text
  • in the cerebral cortex, found in the cell bodies of neurons in layers II-VI and in apical and basal dendrites of pyramidal neurons (not found in the dendrites in patients with Alzeihmer disease)
  • was first expressed and secreted by neuro-progenitors while the maximum was reached in mature cortical neurons
  • basic FUNCTION
  • postsynaptic protein kinase substrate that binds calmodulin in the absence of calcium
  • target of thyroid hormone in brain
  • neuronal protein implicated in learning and memory
  • calcium/calmodulin binding protein, and proapoptotic factor
  • with PCP4, small IQ-motif calmodulin (CALM1)-binding proteins originally identified in the central nervous system (Kleerekoper 2009)
  • enhances post-synaptic sensitivity and increases synaptic strength in an activity- and NMDAR-dependent manner (Zhong 2009)
  • acts as a third messenger substrate for protein kinase C-mediated molecular cascades during synaptic development and remodeling
  • is the main postsynaptic protein regulating the availability of calmodulin-Ca(2+) in neurons
  • implicated in spatial learning and hippocampal plasticity
  • increased prefrontal cortex neurogranin enhances plasticity and extinction learning
  • NRGN-mediated enhancement of synaptic strength is due to its ability to target, rather than sequester, CALM1 within dendritic spines
  • CELLULAR PROCESS
    PHYSIOLOGICAL PROCESS
    PATHWAY
    metabolism
    signaling signal transduction
    a component
    INTERACTION
    DNA
    RNA
    small molecule
    protein
  • binding calmodulin in the absence of calcium and enhancing synaptic strength (Zhong 2009)
  • NRGN is one of ZFP804A targets
  • FMR1 interacts with the 3'UTR of the NRGN mRNA and is required for activity-dependent translation of NRGN in the synaptic compartment and contextual memory formation
  • cell & other
    REGULATION
    Other expression modulated by thyroid hormones and retinoids (Ruano 2008)
    ASSOCIATED DISORDERS
    corresponding disease(s)
    Other morbid association(s)
    TypeGene ModificationChromosome rearrangementProtein expressionProtein Function
    constitutional     --over  
    in patients with structural lesions resulting from mild traumatic brain injuries
    constitutional     --over  
    of GAP43 and neurogranin (NRGN) in CSF from ALzheimer disease patients
    constitutional     --over  
    in the AD patients than in cognitively healthy controls
    Susceptibility to schizophrenia
    Variant & Polymorphism SNP , other
  • polymorphism rs12807809 located upstream of the neurogranin (NRGN) gene has been identified as a risk variant for schizophrenia
  • Candidate gene may have a role in neurocognitive and behavioral defects in the 11qter deletion disorder DEL11QD (Coldren 2009)
    Marker
  • NRGN and NPTXR concentrations in CSF are promising synaptic dysfunction biomarkers reflecting pathological changes in AD
  • Therapy target
    ANIMAL & CELL MODELS