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FLASH GENE

Symbol

VPS13D

contributors: np - updated : 27-09-2004

HGNC name	vacuolar protein sorting 13D (yeast)
HGNC id	23595

FLASH GENE DNA RNA EXPRESSION PROTEIN DISORDER ANIMAL & CELL MODELS

Location	1p36.21      Physical location : 12.290.112 - 12.572.096
Synonym name	vacuolar protein sorting-associated protein 13D
	related to C elegans, cosmid C25H3, >100kDa
Synonym symbol(s)	FLJ10619, KIAA0453, FLJ23066

DNA

TYPE	functioning gene
STRUCTURE	282.00 kb     70 Exon(s)

text structure

translation start codon is in exon 2

MAPPING

cloned

Y

linked

N

status

provisional

RNA

TRANSCRIPTS	type	messenger

identification nb exons type bp product Protein kDa AA specific expression Year Pubmed VPS13D 1A - - 14634 - 4388 ubiquitous Velayos-Baeza VPS13D 2A - - 14559 - 4363 widely but not in brain and testis Velayos-Baeza

EXPRESSION

Type

constitutive of

expressed in	(based on citations)
organ(s)	System Organ level 1 Organ level 2 Organ level 3 Organ level 4 Level Pubmed Species Stage Rna symbol Cardiovascular heart         Digestive intestine large intestine colon     Nervous brain         Respiratory lung         Urinary kidney

tissue

System Tissue Tissue level 1 Tissue level 2 Level Pubmed Species Stage Rna symbol Connective bone       Muscular striatum       Nervous peripherous

cell lineage

cell lines

fluid/secretion

at STAGE

physiological period

embryo

Text	stem cells

PROTEIN

PHYSICAL PROPERTIES

STRUCTURE

motifs/domains	a UBA motif
	a ricin-B lectin domain

HOMOLOGY

Homologene

FAMILY

VPS13 family

CATEGORY

unknown/unspecified

SUBCELLULAR LOCALIZATION	intracellular
	intracellular,cytoplasm

basic FUNCTION

unknown

CELLULAR PROCESS

PHYSIOLOGICAL PROCESS

PATHWAY

metabolism

signaling

a component

INTERACTION

DNA

RNA

small molecule

protein

cell & other

REGULATION

ASSOCIATED DISORDERS

ANIMAL & CELL MODELS