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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (52520 bp)
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PERCEVAL Exon Candidates (14 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1375       1441   0    Initial     67    59    Marginal
gcgcgtggaggccggggcggggcgggcgcagccggcgctgagcttgcagggccgctcccc
tcacccgcccccttcgagtccccgggcttcgccccacccggcccgtgggggagtatctgt
cctgccgccttcgcccacgccctgcactccgggaccgtccctgcgcgctctgggcgcacc
ATGGCCCGCGGGGCTGCGCTGGCGCTGCTGCTCTTCGGCCTGCTGGGTGTTCTGGTCGCC
GCCCCGG
gtgagcgagcggagggatccgggttgggggacgcggagggcgcgggccgggactggggat
ccgcttgagatgcggcgttgggggcgccccgcggggacacccggagcctcctccctgccc
ggcaggacgcgctgtgcccacgggggcccaggcccggaggaggcgcccactttctcccca

Exon  2 +      13289      13402   0    Initial    114    72        Good
gagcttctcaatagcacatgttctcagctgaggttcaacaaagccagaccctgccttctc
gggccagcgcgtactgtcaacagggttctttgcaaggtctatttggtgtcccgtgttttg
tgttttcgtgctttttgtcagtgattttgcgctttcaaatatccccaagtcggtgctgac
ATGCTACCTAGCGTCCCTAAGTACAGGAAAGCTGGCATGGTCTCACGGGGAAAATACACA
TTTGATGAGCGTCATTTAGGCACGAGTTATAGTGCTGTTGGCTTCGAGATCAAT
gtgagtgactccacaatgtctattcactgcggtgtctttaaacagaaacccacataaaac
gcgcttaggtagtgattggttcatgacctctgggaacgtagtcctgtatttacgtgggag
caatagttcactattcgctaattcagtgttcgctgagactttataaaacgtaactgcttt

Exon  3 +      22090      22236   0    Initial    147    42    Marginal
ctgggcatgatgggcgggcgcctatagtcccagctactcaggaggctgaggcaggagaat
tgcttgaacccaggaggcggaggttgtagtgagccaagatcatcgcactccagcttgggc
aacagagtgagactctgtctcaaaaagaaaaaagaaggaagtcctgccatttgcaacaac
ATGGATGGAACTGGAGGACATGATGTTAAGTGCAGTAAGCCGAGCACAGAAAGACAAATA
CCGTCTGACCCAAACACGCTTACGTGGAATCTAAAACCACTGAACTCACAGAAGCAGAGT
GGAATGGCGGTGACCAAGGGGTTGGGA
gtgaggggtgggggaaatggggaaatgatgggtaaagggtacaacatttccatcagatag
gaagggataagttcaggggtctactgtactcagggtgactgtggttagtaagaatgcgtt
gcatacttgaaaatgcctaagacagtagctttgaactgtttgcaccacaaataaataggc

Exon  4 +      24436      24468   1   Internal     33    57    Marginal
cttttaggcatggaagtgaatatttagaatgagaagagaaatcacgcaccttgtaaattt
ttttaagttgctgttttaaatatcacaaaaagaaaaatcgcatatcttttttatctctat
aatattcaaatttatttttatttttcttgtttctaagttgactctttttttctctcttag
ATGGTGGTTTCGATTTATCCGATGCCCTTCCTG
gtgagtatcaacatcattttttaaaatcccgtcaatattttatgttaacatagtatatac
aggcatatcccagccatttccagctaggttctagaccaccgcaataacaggagtcatagc
aatttttggcttcccagtacatataaatgttatgtttactctcaactgtagtctattaag

Exon  5 +      27619      27760   1   Internal    142    71        Good
gtcttctgggctcaagagtcgttgtataaacctcagctcggtgtgggcaggtgagaaaaa
acaatgctaaaaacattctccgactgtttccaagaaaatgaaacatccttaaccacaaaa
gagttgacacttgttttcccagctgcaacttttactaactgaaatatcttatctctttag
ACAATGAAAACAAGAAACCCACTGCAATCCCCAAGAAACCCAGTGCTGGTGAGAAGGGCT
TCTTCCTAGTATGCAAAGAAAAAGAGCAAATCATTTTCTCGGACAGCAGGACGGGACTTA
GGCAACTAGAAAGAAGACAGAA
gtgatttgagtgctccggctggagtctggttaatagttaatactggaattgtgttatgat
gttacatttcatgtagtgattccagtaaaagaatggttgctgatgtgaaatgtttcgggg
ccatttggacaacatctctgtgtgcttttattctaagggtctgagttactctgtctttag

Exon  6 +      28898      28973   1   Internal     76    56    Marginal
aggtccacgtgatggaattgcccaagggtcaaccccactggcggataaacagagtaaaaa
tgatgctaaaacttatggcatcagtgtcttacagctaagacactgtcttgtcttagcact
tctgagttttctaatataaaacattaatagctccacttcattattgggcttcctgtctag
AGTGTCAGCTCATGAGCAAAGGGACCCTGTGTCCCCAGATCCTTGAACTAAGCAATCATG
CAGATAGCACCAATGA
gtaggtgttgagcgtctgaatttatactatcatagtctccttgaggaagggactggaaat
tcccatatgtcactcaggatggctcagtacatgctgttgggtggatgccagcaaccattc
ctccatcttagttgggttttcaaaatcattcttcatactagaagacaagatctgaggcca

Exon  7 +      29675      29778   1   Terminal    104   100   Excellent
agaatagtgatgtaaaaatggtcaggaattcactttttctaatgagatcctggtcaagct
gatattcagaaaagtatttaggaatgtggggccgtggtgtgtttttgatctgttcacgag
gtcattccttcctcgtttctctctggaatttggtattaactgctctttcccctcttttag
GGGATGACTTTGACTTAGGAGATGCTGTTGTTGATGGAGAAAATGGTGAGTATTTTCCTT
TAATCTCTTCTGCTGCTGATCTGCTTATTATCACCCAATTATGA
tcatttcagagagaattctcccatttaaattataaagggaaccagttttcacagtggaaa
cctagggaataggtgtgtcggtttgttcttgctgttgtcgttgggtttttctttacaacc
agtacgtgtgcttttattttaaaactcttacagtctttggaaggacatgagacaaatgtg

Exon  8 +      33230      33378   1   Internal    149    82        Good
atttaaggaatgtgaatattaaagccctgagaatagtgataatgcctgggagtatgcgtt
ctcagagtacccctagagtgtaacaggcagcacctcagctctgtagctgtgtaacatgca
cccttagagtgtaataggcaggaccccagctctgtagctgggtaacatgtacccccgtag
AGTGTAAGAAGCAGGACCCCAGCCTCTTCACGGTCCTGGCTGTGAATTTTTCCTTGACCC
CAAACCTTCCCATTGCAGACGTTGTTTTTGTCTTGCAGGAAAAGGAGGCAGTGATGGTGG
AGGCAGCCACAGGAAAGAAGGGGAAGAGG
gtaggtgcacctggcttctgtcttcttgtctctcccacgtggtgttgagaaggggaagca
gaatgtctgagagctggcggactgcactggcattggcctcctaaagctactggcaggagg
cacgggtgttctgtgccaagtgctcccaagtgatgtagctgcagaggtcccccagcaaac

Exon  9 +      33616      33766   0    Initial    151    45    Marginal
gcagaatgtctgagagctggcggactgcactggcattggcctcctaaagctactggcagg
aggcacgggtgttctgtgccaagtgctcccaagtgatgtagctgcagaggtcccccagca
aaccagccctgctccgggtgcccacgtgacgcggattttatgtttggtcacctgcccacg
ATGCCCTGGCTGGCGACCCGACCCCTACATCACGCTTCGCCTTGTCCTTGTGTTTACAAA
AGCTCCTACACTCACCCTAACGATCAGAGGCTTGTGACGCAGTATCCTCGGTTGCGCTTG
GCCCTTGAGAACGTCAGTAACCAGGTGGGAG
gtgggaatgtggatcgcttccaccctggctgtaacaggcattgtgttctccatggaagtg
ccggtgatgtatctcctgtctcctttttcataaccttttcccttagatgggacaagaaaa
taatgacagacagaattccttttaaaactgtaaagaaaacaaaatgaggtaagaaagaga

Exon 10 +      36274      36387   1   Internal    114    96   Excellent
tttgccttcctgtgtatcattctcggcatgcttcctttgcaaatcggtcagctcaggcgt
ctgagatgttctgaggatcttggtgctctcagactgactgtctctgccagccactgcccc
ctgggatcttctctgcaccgtgcgtgtctcaatcacgatgctgtgtgcttcctcctgcag
CCGACGCCCCAGGCGTGATCCCCGGGATTGTGGGGGCTGTCGTGGTCGCCGTGGCTGGAG
CCATCTCTAGCTTCATTGCTTACCAGAAAAAGAAGCTATGCTTCAAAGAAAATG
gtaagtctcagtccgccggtgcctctccttcatgccttgctgattggaaaactgtgcttt
ctttaaaaggcagaaaccaaactcgggctggcacgaaacaggtgcacgatggctgatggt
tcgtgaaactgctaaaattctggaatcgaaccttctggctttgatttcagggctgttctg

Exon 11 +      38025      38189   1   Internal    165    77        Good
tgaacttctcaccctacttagatcttaagtccttattcattcttggtcactgatgtcatt
cactcaaagcactgcctcctgaagattttagagggattcctagaacatttgaatagatgc
tggtgtggacaaagttagactgtaggggtggagtttccccgtaatctcccatcattccag
CATTTGACATCCACAAACATTATTTAGAGCGTGAAATGGAGAGTCCTAAACAGCTTTCGG
ATCTCAAGACTTTAAATGAGCTGCTCGTGTTTATTTCCCCGTTCTTGCTGTGGGGTTTTG
GGCAGTGCGTGGAAGACAGTTGCCTCCTACCTGGTGGGCAGACGA
gtgggaaatggtgtttggttgtttcttttttttttttttttttttttgagatggagtctc
actctgtcacccaggctggaatgcaatggctccatcttggctcactgcaacctccacctc
ccgggttctcctgcctcagcctcccgagtagctgggattacagatgtgcaccaccacgca

Exon 12 +      41131      41221   0    Initial     91    45    Marginal
aaaaaaaaaaaagagaaagaaaacaaaaacaaggcactcttctataaataccaagaccct
acctcaaaagaggacctttccaactgcatccactcacagcttggtttttatacctgaatt
ataaaatgagtttaatatttatctcagtgacatgattttgttagtagacatggaattgtg
ATGTTGGATCGAGTTATCCGGAAGACGAAAGATGTCAGAGCCCTCAGCCTCTGGGGCAGG
ATTTTGCTTTATGGGTTCGATTTCCGGGATG
gtgattttgagatctggcaaccccataggttcatggggagcttggagatttcataagaag
gatgtgagtatagcatgccctggtccttcaagaaaccatgggccaggcgcggtggcttac
gcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttt

Exon 13 +      46943      47112   0    Initial    170    51    Marginal
caggaggctgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagctgat
atcgcgccactgcactccagcctgggcgacagagcgagactctgtctcaaagaaataata
ataataataaataaataaataaataaataaatttgggaatggaaacaagactgggaaaaa
ATGCTGGAGGAGGAAGAAAACCGGGTACACAAGACGCCTTGGCTGTCTTGTCCTTTGATG
GCTGGGGAAGCTCTTAGTGCTCGGAGTCCTCACTCACCTCTCTGCATTCTGAGGGAGGTA
GAAGGGGGGACAGGAGAGCCAATTCAACCTGAGAAGGATGATTGGTGGAG
gtgggtaaaggaagaaagtcccctttccctaggtactgaaaagatgctaatctgctgaga
ttctctgtatttatttttatttattttaatttttattttgagacagtcttgctctgtcac
ccacgctggagtgcagtgccacgatctcagctcactgcaacctccacctcttgggttcaa

Exon 14 +      48214      48349   1   Internal    136    93   Excellent
cttcacttacatgagtgttagactccatgttcccagtgggtctcggggttcagaactgag
tgctctcatccaagcaataggagcgtcgacctcaggaaagcccaagtgttttgtgtgtat
tttgaggagtgggttatctgttgcactgagcctctctgtgtattttcttcttcttttcag
CAGAACAAGGGGAGGTGGACATGGAGAGCCACCGGAATGCCAACGCAGAGCCAGCTGGTA
AGAAGGACGGGGAACGATGGCTTGCACACGTGGCCAGTGTTCCCATTTTATCTTCTCCAT
CCTCTCCCATCTTGCT
gtcctgctcacattctcaaatttggttgcatggctttgaatgtcttcctttatgtctcgt
tgctttggagggatactttcaaaagacaatgaatgtgtaaacttcctagggcctgggcct
tcagagaagacctatatgtgcctaagtctctgtttaacaaaatattaaggaagttttccc

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