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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (5270 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1207       1381   2   Internal    175    88        Good
gcggagagcagtcccggcccgccctccacgactcctcctcctgcgagctgggccactcag
cggctctgccgcccagcgcgccggggcccagaccccgccccggccccgcctccgacgcct
gccgctccagctccggctccccctatataaatcggccatttgcttcgctccgccccgcag
CGCCGGAGTCAAAGCCGGTTCCCGGCCCAGTCCCGTCCTGCAGCAGTCTGCCTCCTCTTT
CAACATGACAGATGCCGCTGTGTCCTTCGCCAAGGACTTCCTGGCAGGTGGAGTGGCCGC
AGCCATCTCCAAGACGGCGGTAGCGCCCATCGAGCGGGTCAAGCTGCTGCTGCAG
gtacgtcctgggatccaggagcccaaccaggaagtggggggaagggtcgcacagaaggcg
ggcgcccgaggggtggcggggagcgaactctaaagacatggccagggaagcggcttagga
gaggccagagcggggcgcagaggcagaacagaagtcaaactggtgggaggcgcctttagt

Exon  2 +       2416       2944   0   Internal    529    98   Excellent
cacctcttcccctgtgacagcctcagagggttgggagggtccagccagtatgatatacga
agactagatttgagagaggggagcctaccttaaagggcattgatcgagatggcataagct
cttctctttcccttccccatggttataactgtccctgttggcttccttcctgtctgttag
GTGCAGCATGCCAGCAAGCAGATCACTGCAGATAAGCAATACAAAGGCATTATAGACTGC
GTGGTCCGTATTCCCAAGGAGCAGGGAGTTCTGTCCTTCTGGCGCGGTAACCTGGCCAAT
GTCATCAGATACTTCCCCACCCAGGCTCTTAACTTCGCCTTCAAAGATAAATACAAGCAG
ATCTTCCTGGGTGGTGTGGACAAGAGAACCCAGTTTTGGCTCTACTTTGCAGGGAATCTG
GCATCGGGTGGTGCCGCAGGGGCCACATCCCTGTGTTTTGTGTACCCTCTTGATTTTGCC
CGTACCCGTCTAGCAGCTGATGTGGGTAAAGCTGGAGCTGAAAGGGAATTCCGAGGCCTC
GGTGACTGCCTGGTTAAGATCTACAAATCTGATGGGATTAAGGGCCTGTACCAAGGCTTT
AACGTGTCTGTGCAGGGTATTATCATCTACCGAGCCGCCTACTTCGGTATCTATGACACT
GCAAAGGGTAAGTTTGCTGTGGGCTTTAACGTTGTGTTCTTAGGAGACA
gtttaaaagagcattgtaccaacctaacagtccaagagctaaagagttgtttttttaatt
gctaaaggaagccaagatcatccaatgcaacccttgtgtacagatgacgtgtttagggga
tgtggggaaaggaagtcagtaaaactctgctttttggtaaaagcatctctttcctattcc

Exon  3 +       3128       3268   1   Internal    141   100   Excellent
taaaagagcattgtaccaacctaacagtccaagagctaaagagttgtttttttaattgct
aaaggaagccaagatcatccaatgcaacccttgtgtacagatgacgtgtttaggggatgt
ggggaaaggaagtcagtaaaactctgctttttggtaaaagcatctctttcctattcccag
GAATGCTTCCGGATCCCAAGAACACTCACATCGTCATCAGCTGGATGATCGCACAGACTG
TCACTGCTGTTGCCGGGTTGACTTCCTATCCATTTGACACTGTTCGCCGCCGCATGATGA
TGCAGTCAGGGCGCAAAGGAA
gtaagttccacttgagcagaagataaagttgtagtcgtggggcaatctgctgccacaaac
tggtgatacatacctttaaaatggctgtctgtccaagtcaagggatggggttgatagcat
ctgtgtctgttccacaactgcctttgagctggcccttcagatgcctatgaatgagggtgc

Exon  4 +       3656       3803   1   Internal    148   100   Excellent
tgggtagtctgtattcctgtggtcatagcattaatatttcagtgttgcccatgctaatgt
gtgaatgttggatttaaagctgacgttcttagaggtggggctctgctttatttagcctag
tgaatcttaggatttttcatcggccttcagtcactaactccatgtctttattctttgcag
CTGACATCATGTACACAGGCACGCTTGACTGCTGGCGGAAGATTGCTCGTGATGAAGGAG
GCAAAGCTTTTTTCAAGGGTGCATGGTCCAATGTTCTCAGAGGCATGGGTGGTGCTTTTG
TGCTTGTCTTGTATGATGAAATCAAGAA
gtacacataagttatttcctaggatttttccccctgtgaacaggcatgttgtattatata
acatatcttgagcattcttgacagactcctggctgtcagtttctcagtggcaactattta
ctggttgaaaatgggaagcaataatattcatctgaccagttttctcttaaagccatttcc

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