-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (41354 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (17 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 876 983 0 Internal 108 54 Marginal aatccacgaatttacccacgctcagaactgaccaggtcctggtacacggcaggtgctcgg cgacatcagcctttctgcctttcatgattattcccagaccttcaccttgagtccctgtgg agatgggcagaggggctgactagtcccggccaccagccactcctcccactgctttcccag GTGGACGGGCCTGGAGTGCTGAGGGTTGGAGCGACCCAGGCGGGCATCCTGGGGCTCATT CACAGCGGGTTCTTCCTGCGTCTGCCGCAGGCCCAGCCTAAAGCCGGG gtcaggcgcagaacagtaccttggaggggagctctgggcacacctggcccgtagtgagtg tgaatttgcgtcagagagctgtcgagacccacggggccaccttgagggtgccggggtctt cccgcaggtgcgtgcatctgtagctggggggagcaggcatttggtggggcctggagtcac Exon 2 + 1255 1452 0 Initial 198 89 Good cggggccaccttgagggtgccggggtcttcccgcaggtgcgtgcatctgtagctgggggg agcaggcatttggtggggcctggagtcacctgcactgaccactctcctgcggcttcttgt cttgcagatttctccacccaggtgaactcctccctcacctccccgacggggcgaggctcc ATGGCTGCCCCCTCGCTGCACCCGTCCCTGGGGCCTGGCATCGGCTCCCCGGGACAGCTG CATTCTCCCATCAGCACCCTGAGCTCCCCCATCAACGGCATGGGCCCGCCTTTCTCGGTC ATCAGCTCCCCCATGGGCCCCCACTCCATGTCGGTGCCCACCACACCCACCCTGGGCTTC AGCACTGGCAGCCCCCAG gtgagtgcggggctggggcaaggggagggggtggggcctggggtggggctgtggcttcaa ctgcaggacgaccgcctcatcttgaggcctctgggaggtaggtgctgtggtctccccgct tgacgcagagtatacagagcctcggggagcagagtgccgtgggggtttgagcccaggtgg Exon 3 + 7719 7869 0 Internal 151 90 Excellent aagcacagtggccccgctgctccggagcagcgtggcgggtggggggcacggccctctcta gcctcggtgtctgtgtgtgaagttgggggtacagctgcgccatccttgctgcagggccgt gggggacatagggacaaacctggtgtacaccccgctgactgctgtggttgccccccccag CTCAGCTCACCTATGAACCCCGTCAGCAGCAGCGAGGACATCAAGCCCCCCCTGGGCCTC AATGGCGTCCTCAAGGTCCCCGCCCACCCCTCAGGAAACATGGCTTCCTTCACCAAGCAC ATCTGCGCCATCTGCGGGGACCGCTCCTCAG gtaccgctgctgtgggggccaggggctggtgggacagggttgtcaggccattgcagggtc tggaggcctccccaaatcaccctcctgtgggccaagcaggacccaaggccagggtgcagg gaggcaggtgcctgggccatgccccactcccagggctccgcgaggccattccagggttct Exon 4 + 8092 8264 1 Internal 173 58 Marginal tcaggccattgcagggtctggaggcctccccaaatcaccctcctgtgggccaagcaggac ccaaggccagggtgcagggaggcaggtgcctgggccatgccccactcccagggctccgcg aggccattccagggttctcacgtctgtgggacagtgagtgttgggtggggtggggcacag GGCAGCCTGAGGCTTCCGGAGAGGAGGTGGCTGCTGATGGCAAGGTCAGCATGGGGGCAG CCAGTGCTGCGCCTCCTCCCTTGGCTGGGTCTGGGCAAGGGGCCCGTGTTGTGCCACTGA CCCCCAACGGCCTGAGAGGGAAGAACGGGCTGCACAGTGCAGACACAGAGCAG gtgacttgcctggggccctggtccctggtgggctgggatttgtccctgccccactcctaa gctgtcctcggaggagcagagagagtgaggctggggcccagtctgagcccaggcaggggt ctggagaccagcaggtccctttctgaggcctggcccgccagctggtagtggcggcgttgg Exon 5 + 8510 8689 1 Internal 180 100 Excellent cctcggaggagcagagagagtgaggctggggcccagtctgagcccaggcaggggtctgga gaccagcaggtccctttctgaggcctggcccgccagctggtagtggcggcgttggatggg gggtgggctccctgccggggcggtgggtgctccccagccctgctctgccctgtcccgcag GCAAGCACTATGGAGTGTACAGCTGCGAGGGGTGCAAGGGCTTCTTCAAGCGGACGGTGC GCAAGGACCTGACCTACACCTGCCGCGACAACAAGGACTGCCTGATTGACAAGCGGCAGC GGAACCGGTGCCAGTACTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGCGGGAAG gtaggccacggcgtcgggtgggggcgcgggcaggtgttggacaaacagtggggcccgggc ttgtgcgtggacacccgagatggacaacagggagtgagtggcctggacagaagcatggca aggccaaggcaggagtgggggcggggcccagcgcgtgggcacacgtgcggcccagagcgt Exon 6 + 14315 14419 1 Internal 105 60 Marginal ctctgtggggctggggttgtcggatcccagggcctgcagctttaggctgctcactgtctt gagcgctcagccctgcccctttggctctcagagcctcagcttccccactgggaagacagc agtgccagctatgtcttggcactgagactttagaattctgcccttgctgcccatccttag GGTCTCAGGGACCTGGGCCAGTGGAGGTGCCGTACCCCTCAGCTCAGATGCTGGCTGAGA TCTGCGTGTGCGGGGGCTTCCTGCCCCGGGGGCTGCTCAGCGTGG gtggggtcggctctataggctcaggaccctgtatggagggtcgtgtcagtagtgaccccg ccccggatgagcaccgccctctggagggctcatggaagtcccatgtgggggctgaccgga gccttctgcagcctctgccagacccttgccatttgcccaccagccctgctccccatcctg Exon 7 + 16728 16897 1 Internal 170 100 Excellent cacaaccacacggaggccaggcctggggcagagatggggtctccatcacccagtgctggt ggggatgctggtgttgtgggtgagttggctgggagctggcaccacccggccaggacagcc ttccctgggagccactggccgggctgagcgtggggctcacctgcgcctcccgggttgtag CCGTGCAGGAGGAGCGGCAGCGTGGCAAGGACCGGAACGAGAATGAGGTGGAGTCGACCA GCAGCGCCAACGAGGACATGCCGGTGGAGAGGATCCTGGAGGCTGAGCTGGCCGTGGAGC CCAAGACCGAGACCTACGTGGAGGCAAACATGGGGCTGAACCCCAGCTCG gtgagttgcagcctgtgcaggggtgggcagcctcacatgcctcagtttccctcactcact caccctcccacctgagcagctgatgagccagagaggtcctgggggctgccctgggccctg tggctgcctcagctcggcctcttacctgaggtgaccccgtgggcccctcgccccagctgg Exon 8 + 21246 21375 0 Internal 130 100 Excellent cccatgtgccatgcaaggtcgcatagtcccaggttctggggattggggcctgggcatctt tgggggccgtattcagcgtcctgcatgggcccagcgtgtggcagggcctggtctgggctg tgtttggtcagtacactggcttctgggactgaatgtcctgctcttcttcctccactgcag CCGAACGACCCTGTCACCAACATTTGCCAAGCAGCCGACAAACAGCTTTTCACCCTGGTG GAGTGGGCCAAGCGGATCCCACACTTCTCAGAGCTGCCCCTGGACGACCAGGTCATCCTG CTGCGGGCAG gtgagtggcgaggcctaggtggggatggggatgccatgcagatgggacacgtaccaggac actcccccctcccgggatactccgcactcccgggacactcccctgtcctgggacactccc ccctcccaggacccactcctacctcccgggacactcccctctcctgggacacactcctac Exon 9 + 23579 23716 0 Initial 138 64 Marginal cttggagagatagccaaggcttttgctgagagagggcggtgctcccaccccaccccaacc caccagaccgatccagagaacagctggccgcacgcagctcttttcctggggatcccagat ggttgtgcgctgggggcctggcggaggtccgagtcgggttggatggctgtgtccgtcgcc ATGTTTGTGTGGTGCCTGGCCCTGTGGTCCCATGTTCTGGCAGCTTCTGGCTCCAGCCTC AGCCTGTGTGGGGTGTTCGTGGTGGAGTGCGGTGCTGAGGGCCTGCGTGGGGTGGTCGTG GTGGAGTGCAGTGCTGAG gttagagggtttctgtggctgtccctcttaggtgggcacctgcctgtggtctccctgcag ctgtcaggtgggggctccccgcaaggcccttcccttagcccagagccctggtgccatgag tccccaggcccttctaggatgcctggaaagccatcccgtggcatctctgcgagggtggcc Exon 10 + 24015 24056 0 Internal 42 56 Marginal agtccccaggcccttctaggatgcctggaaagccatcccgtggcatctctgcgagggtgg cctctgctcctgcccagcggctctttccgggagatctctgcggctgcatgtctctgagtg ggactcccagcctgacctccccctgggcgcccactgaggtccttgctgacctgtctccag TGGGCCCTGCTCATGCATGCTTCTGGCTTCGAGGGCCGCATG gtgaggtctgaagctgcatttccggcatgagtcccagccccactacccacgagcagctga ccttggctgagtcacttactctctgtgcctcagtgtccttgtgtgttctgtctgccgggg ccagcagctcacccatcaggtggtctccccaagccccagtaaggtccactgaagcacacg Exon 11 + 28678 28810 1 Internal 133 100 Excellent tgtagaacgggcattctcaggaacctcttttctgtggaacacttcatgggattggggttc cagagcctgtcaggatgggtcggtgacatgctgcctctgtagggtcccaccaggggctgg ggaaggggcgagccccgtggggcctggagacagctgagtgactgtgtgcctcctccccag GCTGGAATGAGCTGCTCATCGCCTCCTTCTCCCACCGCTCCATCGCCGTGAAGGACGGGA TCCTCCTGGCCACCGGGCTGCACGTCCACCGGAACAGCGCCCACAGCGCAGGGGTGGGCG CCATCTTTGACAG gtgggggtggtcccgggaggggcgagggcgcttcggtcacctccgccaccaggccagctg agttcagccaccttggccccggtgcacatcctgcctagtattatttcagtgcatgaaggg tgcacacatggaaaaagagaaaagcatgaggaggaggctcagagccctgtgccagccctg Exon 12 + 31475 31566 2 Internal 92 100 Excellent ctgggcctgggttccagcccactccctctcggggtgtctgggagtccttgccttggcttg gcccatctcagcggccctcgggccacgccgggctctccagaggccttgggtatctggggt gtggccctggtgagggctgcgacctaactgggatggggtgtctgccctcctcctctgcag GGTGCTGACGGAGCTTGTGTCCAAGATGCGGGACATGCAGATGGACAAGACGGAGCTGGG CTGCCTGCGCGCCATCGTCCTCTTTAACCCTG gtatggccttcctgccttgaggcttctggccccgttctctggtggggcagaggtgcctgg gcctcctcctggctgtacttcttgcctctggctacatgtggggccaactcccaccctcct tgagctcagtgtgcccccctcccagtgaaagtgtggccatgctgccttctgctcaccttg Exon 13 + 33672 33777 1 Internal 106 91 Excellent cgtccccctgccaccaggctctgggggagcgggcggaggcatgtccagcggcattcctcc accacctgctctgcccatggtggggcagcctgggagaccccacacaagcctgggtcctgg gggcaggtgcccgagacacgccccagctgagggttctgacctgtggcttcttcctttcag ACTCCAAGGGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGAGGGAGAAGGTCTATGCGT CCTTGGAGGCCTACTGCAAGCACAAGTACCCAGAGCAGCCGGGAAG gtgggtcccgccccgtcccacacacaccccagacccaggctcttgtctccagagccccca ccccctgcaaggccattttatgtgaatgagaaggtggcaccctccccaggcccagcccat gccagcaggtcctgagcaggcagcaggaggtcctccaggccagtgggctgtggcgggcac Exon 14 + 36037 36184 2 Terminal 148 87 Good gtttccttctagcctcccctccttccttctggaggcttggcataggcagattcagggcta cagaccagcctcagaggggttggggtatcagacacagccccatccccagggaggcctcca gtgccagggcagaactgcccatgccccttgcccggccctcaccagacctgttccctgcag GTTCGCTAAGCTCTTGCTCCGCCTGCCGGCTCTGCGCTCCATCGGGCTCAAATGCCTGGA ACATCTCTTCTTCTTCAAGCTCATCGGGGACACACCCATTGACACCTTCCTTATGGAGAT GCTGGAGGCGCCGCACCAAATGACTTAG gcctgcgggcccatcctttgtgcccacccgttctggccaccctgcctggacgccagctgt tcttctcagcctgagccctgtccctgcccttctctgcctggcctgtttggactttggggc acagcctgtcactgctctgcctaagagatgtgttgtcaccctccttatttctgttactac Exon 15 + 37051 37136 1 Internal 86 100 Excellent ttcggggccacctccaggctgcaggggcgggtcactcacccccctgttttctctctgcct tggtgttctggtttcagactcccgactccccgttcagaccagagtgccccggcccctccc cagcctgagtcttctccttgctctgcggggtgggctgaggcttgtccttgtttcctgcag GGCTGGCCCTGGCTCGGGCAGGGTGGGGCATCACCACCTCACTGGCCTTGCTGGAGGCAC AGGGCTCTGCGGACCTGCAGCCATCT gtgaggcccgcggggatgggaggggaggagggtggcctgttggtttccctcagagggggc aggtggcctggagagagaggggctcaggaactgggagcctcgtgggtggggcagatgctc cgcggcctggagtggctctgccggggcattggtgggacccctgctcaggccttctctctg Exon 16 + 38990 39284 0 Initial 295 51 Marginal aagcggcttccccgcagggcccccacttcccagtggctgcttcctggggacccagggcac cccggcaccttcaggcacgctcctcagctggtcacctcccggctttgccgttcagatggg gctcctgaggctcaggagtgaagatgccacagagccgggctcccctaggctgcgtcgggc ATGCTTGGAAGCTGGCCTGCCAGGACCTTCCACCCTGGGGCCTGTGTCAGCCGCCGGCCC TCCGCACCCTGGAAGCACACGGCCTCTGGGAAGGACAGCCCTGACCTTCGGTTTTCCGAG CACGGTGTTTCCCAAGAATTCTGGGCTGGCGGCCTGGTGGCAGTGCTGGAGATGACCCCG AGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAATGTGCAGCCTGTGGGTAGTC GGCTGGTGTCCCTGTCGTGGAGCTGGGGTGCGTGATCTGGTGCTCGTCCACGCAG gtgtgtggtgtaaacatgtatgtgctgtacagagagacgcgtgtggagagagccgcacac cagcgccacccaggaaaggcggagcggttaccagtgttttgtgtttatttttaatcaaga cgtttcccctgttttcctataaatttgcttcgtgtaagcaagtacataaggaccctcctt Exon 17 + 39762 39825 1 Internal 64 54 Marginal atagctaatactttagagaggatgacagatccataaagagagtaaagataagagaaaatg tctaaagcatctggaaaggtaaaaaaaaaaaatctatttttgtacaaatgtaattttatc cctcatgtatacttggatatggcggggggagggctgggactgtttcgtttctgcttctag AGATTGAGGTGAAAGCTTCGTCCGAGAAACGCCAGGACAGACGATGGCAGAGGAGAGGGC TCCT gtgacggcggcgaggcttgggaggaaaccgccgcaatgggggtgtcttccctcggggcag gagggtgggcctgaggctttcaagggttttcttccctttcgagtaatttttaaagccttg ctctgttgtgtcctgttgccggctctggccttcctgtgactgactgtgaagtggcttctc --------------------------------------------------------------------------------