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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (24150 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1217       1505   0    Initial    289    54    Marginal
ggcgggaaagccttgacgcagccggcgcgcgccttcccttgaagttctggcgacgccccc
acgcgctcggaattccgcagtgtttgtgcgcgccgctcggcctggcgcaggcgcagacag
ggagcagggtccggccgaccgccattgcacaacgcggaggactagcctggggtcacaggg
ATGCCGCGGCTCCTCCGCTTGTCCCTGCTGTGGCTTGGACTCCTGCTGGTTCGGTTTTCT
CGTGAACTGAGCGACATCAGCAGTGCCAGGAAGCTGTGCGGCAGGTACTTGGTGAAAGAA
ATAGAAAAACTCTGCGGCCATGCCAACTGGAGCCAGTTCCGTTTCGAGGAGGAAACCCCT
TTCTCACGGTTGATTGCACAGGCCTCGGAGAAGGTCGAAGCCTACAGCCCATACCAGTTC
GAAAGCCCGCAAACCGCTTCCCCGGCCCGGGGAAGAGGCACAAACCCAG
gtaaaaatcgaaaccgaaggcatgtttgttcacctctgtatatttcttattcctgcattt
gctctgccagaaggtgagcttccccaggaagtggaatttgtgcctagtacacagctcttt
aaaaaattgtaaaaaacagtgtattgaaaatatacaaaacttcaatgaagcgcttttttt

Exon  2 +       8080       8105   2   Internal     26    78        Good
attttcttctaaggtttttatggttttgggttttacataagtctttaatccatcttgagt
taatttttgtgtagagtgtaaggaaggggtccagtttcaattttgagcctacagctagcc
aattcttccagcaccatttaataaatagagaattcttccctcattgcttgtttttgtcag
GTTTGTCCAAGATCGTATGGTTGTAG
gtgtgtggtgtgtggttttatttgagttctctattctgttccattggtctatgtatctgt
tcttgtaccagtaccaagctgttgtggttactgtagccttgtagtatagtttgaagttgg
gtagtgtgatgtaggaaaccacagagatggtggctgcccctccccacaggaactttgttc

Exon  3 +      21312      21563   0    Initial    252    41    Marginal
ctctatttctttatattttaataaagaacaaaatggtttctactgctcagttgtaagatg
tgcataagaagacaaattatcaaatttgaaaatgggcaaaggatttgaagagacatttct
tcaaagaggatatataataagcatatgaaaaaatgcttaacatcattagccatgaggtaa
ATGCGAATCAAAAATATAGTGAGCTACCACTGTGCATCCATGGTGATAATCAAAAAATGG
AAAATGTCAAGTTTTGATGGGGATGTGGGAAAATTGGAACTCTACTGTACCGATGCTGGG
ATTGAAAAATTGTACAGCCACTGTGGAAAAGTTTGGCAGTTCCTCAAAACATCAAACAAA
TTTATATCATGCAGTGTTCCATCCCTAGGTTACATCCCAAAGAATTCAAAACATATGTTC
ACACAAAAACTT
gtgtgtgaatgctcatagcagcactattctttttttttgttttttgagatggagtcttgc
tctgtcacctagaccggagtgcagtggcactatctcggctcactgcaacttcttcctccc
gtgttcaagtgattctcatgcctcagcatcccaagtagctggtattacaggcgtgcacca

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