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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (6567 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1229       1306   0    Initial     78    56    Marginal
gacgtccctcagacgagccgaacgccgaatggccccgagcacgggaagtgcccgcccccc
gcgtgcagccagccaatgggacgccgaaagcggggaggtgccgaggggacgtagcgtcgc
cgcgccaggtctctagcagctgccgctgagccgccggacggacgctcgtcttcgcccgcc
ATGGCCGAGAGCGACTGGGACACGGTGACGGTGCTGCGCAAGAAGGGCCCTACGGCCGCC
CAGGCCAAATCCAAGCAG
gtgctttgctgactgaggagcggccgggccgggcggggcggacgctgggccggggccacg
gaccgtggggcagggggctcggggaagggcaggcggggcctgggacagggcgcaggggac
ggggacaaggctggggtgccgggggcaggacggggttcgaagggcggggcgaatcgcagg

Exon  2 +       4039       4199   1   Internal    161   100   Excellent
tcataactgagagaaaactctggaagtccacgacctgaggtgtgtgaacttgggacagcc
tgggttcccatgtccccttgagttcaggcagcctctggggtctggttaccgctttgaaat
ggtttttcttcaggttaattccaaatcctctcctctgcttttgcctcacaccgactccag
GGGCTGCTGGCCAGAACAAACAACATTCTATTACCAAGAACACGGCCAAGCTGGACCGGG
AGACAGAGGAGCTGCACCATGACAGGGTGACCCTGGAGGTGGGCAAGGTGATCCAGCAAG
GTCGGCAGAGCAAGGGGCTTACGCAGAAGGACCTGGCCACG
gtgaggctgcgccggggctctcactcctggggttgtgggtttggggagggggatggccgg
tgttcagatagcacggggagggtgggctccacccccctggttcccctgcagggaatgcct
cgggaagccaggtcagcccggctctcactgcctctcgcacaaaacccagctgcgtgtggg

Exon  3 +       4488       4616   0   Terminal    129    95   Excellent
cagggaatgcctcgggaagccaggtcagcccggctctcactgcctctcgcacaaaaccca
gctgcgtgtgggtgcgtaccccaggggccctagaagctgctgttctcaggcgacgcttcg
cgcctggttttgcagcagtcctagtggagctgatgtgtataaagcacatcttctctttag
AAAATCAATGAGAAGCCACAGGTGATCGCGGACTATGAGAGCGGACGGGCCATACCCAAT
AACCAGGTGCTTGGCAAAATCGAGCGGGCCATTGGTGAGTGTCCCTCCACCCTTCGCCGG
GTCCGCTGA
acagggaggctacccgctcccagctggggttggtgagagtgggactcgggggaagaagat
ggccctgggggtcccctgttctctgaattctggagctttgcttctccaggtagtacagac
tgagggatggtggggtctctgcaggcctcaggaaacccctaagagcaagtggagtccgag

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