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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (43053 bp)
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PERCEVAL Exon Candidates (15 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       3667       3785   2   Internal    119    83        Good
gatatatttctgcaagaaataaaaggaatctgagggagcttctccttctgataatggcag
acaaggcaagtcagatcattagacctgctgagaataactagaaagggtgagaaaaacaac
agggccaatatttgggatgggactgaaacccagagaggtttagaacagtttttcttctag
AAGCATCTGGATTCCAGAAGAGGTGGTTGAGAAGATTAATAGAGTTTTAAAACAGCCTCA
GGAGGACAGAGAGAAACAAACAAACAAACAAAATGGAGGCAAGCAAGCAGTGGGGGATG
gtaggaaaagtgaagtggacccaaagcatatatatatatatatatatatatatatatttt
ttttttttttttttttttttttgtttgagaccgagtctcactctatcgcccaggctgggg
tgcagtggtgtgatctcggctcactgcaacctccacctcccgggttcaagtgattctcct

Exon  2 +      11881      11936   2   Internal     56   100   Excellent
tatgggaccatcatggtatatgcaatttgtcactgacaaaaaagtcattatgtggtacat
gactgtactttctttggtcaaatggtcagacagaaagattgagtcaaatgcttgcagggt
ctttcaggttttttcttttctttttttttttttgagacagagtctcgctctgttacccag
GCTGGAGTACAGTGCTGCAATCATTGCTCACTGCAACCTTGAACTTCTGGGCTCAA
gtgagcctcctgcctcagcctcctgagtagctaggactacaggtatgcaccaccatgccc
agctaattttttatgttttagttgagacaaggtcttgctatgttccttactctggtctta
aactcctggcctcaagcaatcctcccaccttggtttcggcctcctatagggctgggatta

Exon  3 +      13724      13906   0   Internal    183    79        Good
ctgcctccctttcactgtttcgccctaaacatctgcttcttagatctaagtgattgtact
caataaatcgtgtggagaccagaactctgggccttttgcagcctccattgtgcaactggc
cccctggctcccatctttatgaactcttaacctgtctcttctcttcctttgttgccacag
GGCTTTGGGTACCCTATGGGTGGTGTTGAGGCTGGTCCCCAACATATTGTCTATGGCTGC
TTTCATGCTACAATGACAGAGCTGAATAGGTATGACAGAGAAGGTGTAGCCTATGACGCC
TCAAATATTTACTATCTGGCCCTTTATAGAAAAAGGTTTCTAATTCCTGGTCTAAAGATA
AAG
gtaagatacaaaaaagttctgaacaggcatggtgactcatgctgtaatcccagcactttg
ggaggccaatgcaggaggactgcttgagcccaggagttcaaggctgcagtgagtcatgac
tgaaccactgcactccagcctgggcgatggagcaagaccccatctctatttaaaaaaaaa

Exon  4 +      17665      17751   0    Initial     87    45    Marginal
ctaaatataagatatattaggtctttgatccattttgagctaatgtttgtatttggtgaa
aggtagggattcagcttcattctcttgctggtgttgtcccagcactagttgttgaagatt
gttctttcctccactgaatggtcttgacacccttcttgaaaatcaattgttcataaatgt
ATGTCTGACTTTCAGTGTTCCATTGGCCTATACGTCTATGCTTATACTAGTATCACACTG
ACAAAAGCTGATTATCATATCTTTATA
gtgagctttttgaaatctgaaagtgtgagatctccaactttgttcttttttctcaagatt
gctttggttatgtgggatcaacttttccatttgaatttaaggatcagcttttccatttct
gcaaaaaaaggccatggaaattttgatagagtgtagtgcttttgataacctggaagaaac

Exon  5 +      19296      19498   1   Terminal    203    50    Marginal
ctgtgaaaagcatttcagcatttcttatgtctatacgacatctttaccctatacatgaat
gcacatagaattctattcttgtgtggttagagcagtttgacttcacattgtgtttacttc
cattcacagttactgataatcacataagaaatttaaatttgtgcttttgttttcttctag
GAAAGAAGGGACACTGTTTGGTAAAGGGCATAACCATGTACAACAAAGCTGTGTGGTCGC
CTGAGCCCTGCACTACCTGCCTCTGCTCAGATGGAAGAGTTCTTTGTGATGAAACCATGT
GCCATCCCCAGAGGTGCCCCCAAACAGTTATACCTGAAGGGGAATGCTGCCCGGTCTGCT
CCGCTACTGGTACAGAGATTTAG
ctaagcaaaatatcagtgtgtgattaatctttaacttccatttgtttttgttactaattt
tagattaaaattatgatacattagtcagatctgagtacttaaaatattggcaaaatgctg
attaacatagaaaatatctgggaaaatgtatggtaggggatataaataatagactgtggc

Exon  6 +      22090      22362   0    Initial    273    68    Marginal
tttcttttattaatatcatcaacttatctctgctacctcatccttgcgtggtcattagtc
tcctattctctactcagtggtatagcattaaatgatagaaatgaattttctggtgattct
tcagaacaaagagaacctaccaatttacttcataagcaactgccacctcctcaggtggga
ATGGACCGAATAGTAAGAAAAGAAGCACTTCAATCTGAGGAGGATGAAGAAGTGAAAGAA
GAAGATACAGAGCAAAAGAGAGAGACCCCTGAATCTAGAAATCAGGGGCAACTTTACAGT
GAGGGGGACAGCAGAGGAGGAGACAGAAAGCAGAGGCCTGGAGAGGAGAGGAGGCTGGCA
CACCAGCAACAACGCCAAGGAAGGGAGGAGGAGGAGGATGAGGAGGAGGAGGGTGAGGAG
GGTGAGGAGGATGAGGAGGACGAGGAGGACCCG
gtaagaggagatatgttccgaatgccctctcgatccccgcttcctgctcctcccagaggc
acactgcgcctgccaagcgggtgctctctgtcctacaggaccatcagctgcatcaacgcc
atgcttacccagataccaccgctgacagcaccacagataacaagtctggagctcactggt

Exon  7 +      22461      22540   0   Internal     80   100   Excellent
acgccaaggaagggaggaggaggaggatgaggaggaggagggtgaggagggtgaggagga
tgaggaggacgaggaggacccggtaagaggagatatgttccgaatgccctctcgatcccc
gcttcctgctcctcccagaggcacactgcgcctgccaagcgggtgctctctgtcctacag
GACCATCAGCTGCATCAACGCCATGCTTACCCAGATACCACCGCTGACAGCACCACAGAT
AACAAGTCTGGAGCTCACTG
gtaagagatgttgacttctgctttattttgtgctttaaaagtaaatgactcttagcagct
gggcacggtggctcacgcctataatctcagcactttgaaaggctgaggtggccagatcac
ctgaggtcaggggtttgagaccagcctggacaatatggtgaaaccccatctctaccaaaa

Exon  8 +      23945      24091   2   Internal    147   100   Excellent
gtttataagaaaatgccccacagttctctaaagtggctgttcctttcccacctgcatgct
ggggagctcctgcctctctgcagcctgcccgcacttggtactgtcagttgttttctccct
tcctttttgacattctagagggaatgtggtcatctagaccttctgcccatgtttccatag
GACCACCAGGGAGGGCTCTGAGTGGAACAACAGCAGGACCAGGTGTGAGAGGCTGGCTGG
TGGGGACACTTTGGGTGCTGGGAGCAGCAGGAGCATTCGTCTGGGTAATGAGGCCCCCAT
GCCACGGGTGTCCCTGGAGATGCTGGG
gtgagggaagctgaaaaggtcaacacatttgtgcagagatggccatctgtgacagcacac
tgccagtgtcaaacataatagaagcttccatggcctctctgacaaaggatttcatcctac
tttcatatgatcacctaaggaactcctctcatgctcaggaaagtcccttcctcctgtggc

Exon  9 +      25045      25160   1   Internal    116    88        Good
ccagcttgttacttttctgaacatgctttggttatataatatatattctgtccttgttct
gagtattgctttctcctccagacaaagctctctcttgatatctatgcacacatgcccata
catgtgtgtacatgtatgtatatgcacacatgcctaaaacataaccgctgtgtgtcctag
GCAATTCCATCGCCTCCATCCCAGATGAAGCATTTAATGGATTACCAAATTTGGAAAGGC
TTGATCTGAGTAAAAATAATATCACTTCTTCAGGCATAGGTCCAAAAGCATTCAAG
gtaaatacatgctctgatttgtctatttggatgaatggcttcactatgacttgcattggt
tggagatggggaagggaggaaaaggaaaatgcttctaattggtagtcttcttctaagaaa
gtttcctctctgatgtccctaatttgaattcaagttttcccttgaatatagtttactatt

Exon 10 +      27164      27272   0    Initial    109    79        Good
gggggaataaggggtttgctgtgtggcctggacattactgtctaagcctaaggaaggata
ggtttgtgagacttttagtcacgaccattatatgaaatgtgactgcacagctgtgactag
ataaaaaagtaactttgagatttgctttttaagcttctgaagaagttaatgcgtttgaat
ATGGATGGAAATAATTTGATACAGATTCCTTCACAATTGCCATCTACATTAGAAGAACTT
AAAGTCAATGAGAACAATCTTCAGGCTATCGATGAAGAAAGTTTATCAG
gtatttaatatttgtttttcaatgatatgcttccttataatctttcctatatagtcctgt
agaaattttatttactgtattgccaaatgaataaatagtaaatatttttaggtcacttaa
ccatttgagttgataaaacttcttttaactattgactggtaaaacgtaaaatgaatttta

Exon 11 +      31481      31638   1   Internal    158    93   Excellent
tgagcatctgggatgtacaaagtacttaagaaaaggttttataggaggatacaaaggttt
aaaaaaaactgtatttgccctccaaataaaccggccatttcacatgacatttcaaaaggc
tacaaaaatttgcatggtttttcaattatcctaatattctaatacttttattttttatag
ACTTAAATCAGTTGGTCACCTTAGAATTGGAAGGAAACAATCTCAGTGAAGCCAATGTCA
ATCCTTTAGCTTTCAAACCTTTGAAGAGCCTAGCCTACTTGCGTCTGGGAAAAAATAAAT
TTAGAATTATACCGCAGGGTCTTCCTGGTTCTATTGAG
gtaacaatatatttttttagtgttttaaatgtattatatttgaaatatggtacactacaa
caaaatatattttaagactattgtgatgtaaattaaactctagtttcatgctgtatacag
aatttcctgtaatttaagcattgttttttcttcaagcaatacaaaattctgaatcgaaat

Exon 12 +      34519      34658   0   Internal    140   100   Excellent
ctgtctcaaaaaaaaaaaaaaaaaaaaagacaacttaaaaatatgagcttacttgaaaga
gcagtaagactctttagataatactaatgataatagtctatgtcactattttagtctcca
tgaaattgaacgtatcaactaacacaaaagaaaaataatagtcttctctcttaattatag
GAATTATACCTAGAAAATAACCAAATTGAAGAAATAACTGAAATTTGTTTCAATCATACC
AGAAAGATCAATGTCATTGTACTACGTTATAACAAAATTGAAGAAAATAGGATTGCTCCT
TTAGCCTGGATAAATCAAGA
gtaagtacatgctacaatttaaattttattgaactatttcttcctctcgctattattaaa
cagagtatggaaactgggaatgggataagtgagggaggtgacgatactgaagggctcgga
gacagaatcgtttcttagtgaacccttaccctatccccaaagtgggctacttcatgcagt

Exon 13 +      36118      36313   2   Internal    196    87        Good
gcagcttggtgcaagagactagggctggctatacctggaaaagttcctatttggaatcat
cactacaaactgggtgcttataggaaaatggaccagcatcgagactggccttatcaaaat
ttagagctgatgatcaccatcctgatgtccctaccctgtttacttttttctttgctgcag
AAATCTAGAATCCATTGATCTCTCCTACAACAAGCTCTATCACGTCCCGTCCTATCTACC
CAAGTCCTTGCTGCACCTAGTACTCCTTGGGAACCAGATTGAACGGATCCCTGGCTATGT
GTTTGGCCACATGGAACCAGGCCTGGAATACTTGTACCTGTCATTTAACAAACTTGCTGA
TGATGGCATGGACCGT
gtctccttctatggggcatatcattctctgagagaattatttctggatcacaatgactta
aaatctataccacctgggatacaagaaatgaaagcactacattttctgaggctgaacaac
aacaagatacggtaaattttggctttttcaagtatctgtttaaattttggttggcaaaat

Exon 14 +      39307      39489   0   Internal    183    93   Excellent
ttcttcaggctgtgcaagtagcacggcactggcatctgcatctggtgagggccttcaggc
tgcttccactcatggtggaaggggagatggagtgtgtagagattacatggcaagagagga
ggcaaaaaagaatggggaggtgccagacttctttttttttttttttttttaaacaaccag
CTCTTATGGGAATTAATAGAACAAGAACTTACTCACTCCCCTGATCCTAGAGAGGATATC
AATCTATTCATGAGTGACTTGCCCCCCATGACCCAAACACCTCCCATTAAGCACCACCTC
CAACACTGGGGATCAAATTTCAACATGAGATTTGGAGGGGTCAAAAAAACCAAACCTTAT
GGG
gtatgtgtattttttctaccctttttttcttttttctttctttctttttttttttttgag
acagagttttgctcttgttgcccaggcagaagtgcaacggcgtgatctcagctcactgca
acctcgacctcccaggttcaagcaattctgttgcctcagcctcccaagtagctgggatta

Exon 15 +      40688      40856   2   Terminal    169    80        Good
tagtgcttctatggcttcatctttcacatttgaatctctgacgtagttggaatttattct
ggtctataaggatccaactttattttaagaacaaaatttttttaacaaatgttaaactta
actcctaaaggcagattattactgggaccatgtgtgacttgcatgtctatttttccttag
GAACATTCTTCCAGAAGAAATTTGCAATGCTGAAGAGGATGATGACTCAAATCTGGAACA
TCTTCATCTTGAAAACAATTATATTAAAATTAGAGAAATACCATCTTACACATTTTCATG
CATAAGATCATACTCAAGTATCGTTCTTAAACCACAAAACATCAAGTAA
ttccaagttttcctttgctgtttataaactttactcatgtatttgtagtagctgcatttg
tcattaataagagagacataatcctcctgttatactcagtatcattatatgctagtcaac
ctgattcactaacacacagatgaacaaccaaaatatacctaaaaggtatagtctctagga

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