--------------------------------------------------------------------------------
GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4904 bp)
--------------------------------------------------------------------------------
PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        941        983   2   Terminal     43    64    Marginal
ccagtatattgggtactcagtacttcaggtaaaacagcaaagatatgctgctgttgatga
tggtgatgtgtgtgtgcatatgtgtgtttgtgtttttacgggggtagttaatttatcttc
tcattgcctttccttggtgctgtctctcgggctcactttgcatcttttacctgggcttag
GGCCTATGTGGGAGCAAAGATGCTCATTGTCATGGTCCAATAA
agagaaacagatgggctccagtgagcccctgagtagatcgtctgtccttttgaaaacggc
ggattgaccaaatttattggatttagaattgtcgctattttaaatgttatcacctcccat
ttttaagctatcaaaagagggtagagctatccttattaatgtttttatattttaattatt

Exon  2 +       1231       1749   0    Initial    519    94   Excellent
ccaaatttattggatttagaattgtcgctattttaaatgttatcacctcccatttttaag
ctatcaaaagagggtagagctatccttattaatgtttttatattttaattattaattctt
tcaaacatctggttcctttgctaggtgcgtcctggctgagagttggagctctccagcaac
ATGCCTGAGCAGAGTAACGATTACCGGGTGGCCGTGTTTGGGGCTGGCGGTGTTGGCAAG
AGCTCCCTGGTGTTGAGGTTTGTGAAAGGCACATTCCGGGAGAGCTACATCCCGACGGTG
GAAGACACCTACCGGCAAGTGATCAGCTGTGACAAGAGCATATGCACATTGCAGATCACC
GACACGACGGGGAGCCACCAGTTCCCGGCCATGCAGCGGCTGTCCATCTCCAAAGGGCAC
GCCTTCATCCTGGTGTACTCCATTACCAGCCGACAGTCCTTGGAGGAGCTCAAGCCCATC
TACGAACAAATCTGCGAGATCAAAGGGGACGTGGAGAGCATCCCCATCATGCTGGTGGGG
AACAAGTGTGATGAGAGCCCCAGCCGCGAGGTGCAGAGCAGCGAGGCGGAGGCCTTGGCC
CGCACATGGAAGTGTGCCTTCATGGAGACCTCAGCCAAGCTCAACCATAACGTGAAGGAG
CTTTTCCAGGAGCTGCTCAACCTGGAGAAGCGCAGGACC
gtgagtctccagatcgacgggaaaaagagcaagcagcagaaaaggaaagagaagctcaaa
ggcaagtgcgtgatcatgtgaaggcccttcctgcgggaggagcagctgtgtgtccccggc
acctcactcccccaaaatgacacccaccgtcgtcagggtagcatgtataatgcccacgtg

Exon  3 +       3960       4007   0   Terminal     48    80        Good
cgtggcccccttcagattcctcaagcaggattgttctgttctaaaaagctgttgcacagc
attcgcaatgagatctttagttggcggattttctggaacatttgtttttcaacttgtccc
gacattttttttctgtttctattctgagagagagatgatcaagttttaatttgggtatag
GTTAAATGGAAGAAGAAACAGAACTTCATGGCCAAAGTAGACCTATAG
attttgattgggttctttgttaacagtagaatgcgatctttgccactgactgtagtatta
ataaggttttaatgtgagatattcctgcaaaccatcccatttctactgattgtaagtcag
aatttcttttatccctttcaaatcagtttctacatgtttaagtgttcagggcttcatcag

--------------------------------------------------------------------------------