-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (21952 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1201 1228 0 Initial 28 100 Excellent cccttcctagcaggggtccctggggacccgcggccgcctcccgcgcccctctgtcccctc ccgtgttcggcctcgggaagtcggggcggcgggcggcgcgggccgggagggggcgcctcg ggctcaccccgccccagggccgccgggcggaaggcggaggccgagaccagacgcggagcc ATGGCCGAGGTGTTGCGGACGCTGGCCG gtgagtgcaggcctcggccccgggtgcccgcgagggagccgctaccgcagggaatgcggg gtgcacccgacagccgggccggggtgggggcgctcagggctgcgaggcttcgggccggcc gccgccccagcctccgagaccctgcgtcctggggagccggcgggcaggtgggcttggccg Exon 2 + 1643 1766 2 Internal 124 50 Marginal ggggggctcgtctccggggtccccgggtcctggtgagagcggggtccctcgacgccgtgg cggtctccagcctctcctcgcccctccacgctccccgccttccatgagctgctattttca gcacctaccgcccgaccctggactaggacaaggctctgggctgccctgcccgccccccag CCCTTCCCTCGGGCACGGCGGCCAGGCGCCCGGGTTGACCGGGAACAGCCTCCATACCCC AAACGCGGAGGCGCCTCGGGAAGGCGAGGTGGGCAAGTTCAATGCCAAGCGTGACGGGGG AACT gtgccccgggccctcaggtgatataggagttaagaagaaattattgaggcaaccagatgc ggtgactcaggcctgtaaccccagcactttgggaggccgagggtggatcacctgtcctta attttcttggcgccagaagatgaattgagtatttacccagacaacaacgtcgcttcagag Exon 3 + 12185 12265 0 Initial 81 52 Marginal tttacagaagctttgttgctagtggccccgaacagtgaaaaaaccacagtgtctgtcaat aggagacagaataaatgaattgtggcggattaacaatggcgtgcttctcagaaatgaaaa agaacgaacgattgatacacgtgacaatataggtgaatcttcaaaacagcatgcggtgtg ATGCAGCCAGACATAAAAGAGCATGTATCAGAGGATTCCGTGTATGGGAAACGCCAGGGA ATCAGATCCATGGTTGTCAGG gtcaggagggaccttactggggtgattacatgtgtacatacattgtgtgaaactcatcaa aaccgtatacctaaagtgggcacattttattggatgtaagttatccctcaaattaaatta attttcaaagttttaaaaaatggaaccatttttgccacattgaaggaaaattatttccac Exon 4 + 13804 13894 2 Internal 91 50 Marginal ggcctttggttgaccatgggtaactgaaactccagcaagcgaaggtgtggataagggcac tactgtacgtgactttaatatacataaaatcaccttaaagacaatgattgtttccagaac atgagcctctgagacagcagggagatactaggggaagttggtggctcctctccctggcag GAACTGGTCTGGGCTCCTGGCTCAGCCTGGCCATGAGGCTGTCCTGGCCTCCCTCGGTGG GTTCGACAGTGACCTCGACGTGCTCATTTCA gtgtggttcattccggtctcccaggggaagggggtgctgagtggaaggaggtcactggga agccggggtggctctcagagtctgcaggagcagtcgggctgatgagctgggaggagcaga ccgcctccctcttctctgagtgggaggagggccagatctggactgggtttggagatgctc Exon 5 + 13996 14076 0 Initial 81 44 Marginal gctcctggctcagcctggccatgaggctgtcctggcctccctcggtgggttcgacagtga cctcgacgtgctcatttcagtgtggttcattccggtctcccaggggaagggggtgctgag tggaaggaggtcactgggaagccggggtggctctcagagtctgcaggagcagtcgggctg ATGAGCTGGGAGGAGCAGACCGCCTCCCTCTTCTCTGAGTGGGAGGAGGGCCAGATCTGG ACTGGGTTTGGAGATGCTCAG gtggggctcagagcatcacctgtggggcagagggaccatcttggcagatgaaggcccgtc gcagggtgtgatgcctgaattacaaggcgggacaggtaaagtggggcaggtgagagaagg agggtgagtgatgtgatttttctactcctgttttccaggaaaaccaaaatgccacgcact Exon 6 + 18880 19010 0 Internal 131 99 Excellent ttggagtcgcatttgcctctggttggtttcccggggaagggcggctgcctctggaagggt ggtcagaggaggcagaagctgagtggagtttccaggtgggggcggccgtgtgccagaggc gcatgtgggtggcaccctgccagctccatgtgaccgcacgcctctctccatgtgcagtag GAAGGATGTCCTCGTGGTACCCCTTGGCTGGCTCCCATTGTCTGGGAGGGCACATTCAAC ATCGACATCCTCAACGAGCAGTTCAGGCTCCAGAACACCACCATTGGGTTAACTGTGTTT GCCATCAAGAA gtaagtcagtgaggtggccgagggtagagacccaggcagtggcgagtgactgtggacatt gaggtctctccttgtgttcaagacagagtggggtggcggccagccttgtcctcccagagg gtagatgggaaaggtcattcatgcagcatcttactgagctcatgtgggctcgtgggctcg Exon 7 + 20063 20753 2 Terminal 691 88 Good gggaagaggatgaagtgaatcgcagcccgaggactcgctcaggacagggcaggagaacgt ggtgcatctgctgctctaagccttccaatggccgctggcgggcgggtgcaggacgggcct cctgcagcccaggggtgcacggccggcggctcccccagcccccgtccgcctgccttgcag ATACGTGGCTTTCCTGAAGCTGTTCCTGGAGACGGCGGAGAAGCACTTCATGGTGGGCCA CCGTGTCCACTACTATGTCTTCACCGACCAGCCGGCCGCGGTGCCCCGCGTGACGCTGGG GACCGGTCGGCAGCTGTCAGTGCTGGAGGTGCGCGCCTACAAGCGCTGGCAGGACGTGTC CATGCGCCGCATGGAGATGATCAGTGACTTCTGCGAGCGGCGCTTCCTCAGCGAGGTGGA TTACCTGGTGTGCGTGGACGTGGACATGGAGTTCCGCGACCACGTGGGCGTGGAGATCCT GACTCCGCTGTTCGGCACCCTGCACCCCGGCTTCTACGGAAGCAGCCGGGAGGCCTTCAC CTACGAGCGCCGGCCCCAGTCCCAGGCCTACATCCCCAAGGACGAGGGCGATTTCTACTA CCTGGGGGGGTTCTTCGGGGGGTCGGTGCAAGAGGTGCAGCGGCTCACCAGGGCCTGCCA CCAGGCCATGATGGTCGACCAGGCCAACGGCATCGAGGCCGTGTGGCACGACGAGAGCCA CCTGAACAAGTACCTGCTGCGCCACAAACCCACCAAGGTGCTCTCCCCCGAGTACTTGTG GGACCAGCAGCTGCTGGGCTGGCCCGCCGTCCTGAGGAAGCTGAGGTTCACTGCGGTGCC CAAGAACCACCAGGCGGTCCGGAACCCGTGA gcggctgccaggggctctgggagggctgccggcagccccgtccccctcccgcccttggtt ttagcagaacgggtaaactctgtttcctttgtccgtcctgttgtgagtaactgaagccta ggccccgtccccacctcaaatcacacacaccccctccccaccacagagacaccattacat --------------------------------------------------------------------------------