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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (51441 bp)
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PERCEVAL Exon Candidates (16 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        161        452   2   Terminal    292    46    Marginal
gggtggggccagataagagaataaaagcaggctgccagagccagcagtggtaacactgtg
gaagcttccttctttccctctgcaataaatcttgctactgctcactctttgggtccacac
tgcctttatgagctgtaacactcaccttgaaggtctgcagCTTCACTCTTGAAGCCAGCGAGACCACGAGCCCACCAGGAGGAAAGAACAACTCCAGACC
CACTGCCTTAAGAGCTGTAACACTCACTGGGAAGGTCTGCAGCTTCACTCCTGAGCCAGT
GAGACCACGAACCCACCAGAAGGAAGAAACTCCGAACACATCCGAACATCAGAAGGAACA
AACTCCAGACACGCCGCCTTTAAGAACTGTAACACTCACCGCGAGGGTCCGAGGCTTCAT
TCTTGAAGGCAGTGAGACCAAGAACCCACCAATTCCGGACACAGTACCATGA
aggaatgaaaatacataacaatgtgatgtatcatgttttatttcctagactagtgacaaa
tgaaagctaagtgtagcaagggtgcagggacacaggcacatttgtggactaggtgtgagt
gtaagctgggttcgatggtcttttggccaacatagtgaacccctgtgtctactaaaaata

Exon  2 +       1486       1629   0    Initial    144    52    Marginal
cctgcccggaggcagtgaaagtacagccgcgccgccccaagtcagcctggacacataaat
cagcacgcggccggagaaccccgcaatctctgcgcccacaaaatacaccgacgatgcccg
atctactttaagggctgaaacccacgggcctgagagactataagagcgttccctaccgcc
ATGGAACAACGGGGACAGAACGCCCCGGCCGCTTCGGGGGCCCGGAAAAGGCACGGCCCA
GGACCCAGGGAGGCGCGGGGAGCCAGGCCTGGGCCCCGGGTCCCCAAGACCCTTGTGCTC
GTTGTCGCCGCGGTCCTGCTGTTG
gtgagtccccgccgcggtccctggctggggaagagcgtgcctggcgcctggagagggcag
ggagagagggggacacggcgggggtgcgtggcccgggtcgcctgcggccgggcatgtccg
ggcaagacgcaccagtcgtcggagtcgggggaagagatgggtccccgggttgggcaggag

Exon  3 +       8608       8701   1   Internal     94    76        Good
ttcaacaaaatactatcagagagaattcaacagtaccttagatggattatacaccatgac
caagttggatttatttccggaatgcaagaatgtttgaacaaatgaaaactgaacaatgta
atacattgcattaatagaatgaagggggaaaaagacacatgatcatctgagttgatacag
GGAAAGCCTCTGATAAAATTCAAAGCCCTTTCATGATGAAAACACCCAGCAAACTAAGAA
TAGAAGAAAACTTCCACAACATCATAAAAGCCAT
gtaagaaaaccccacagctaacatcatactcagtgttgaaagacggaaagcttttccttt
aagattaagaacaacataaggatatctacccacctttgccactcagcatagtactggaag
ttctagccaaaacaggcaagaaaaagaaataagagcatctggactgtaaaggaaaaagta

Exon  4 +      16158      16380   0    Initial    223    70        Good
gttcataggagtatactgtacttaaatgttaaaaggtgttaatagctcaaaagaaaagtt
tccttgcctctgaaaagcaaaacaaaggattagcaacattttaagccgaaagtcaaaaag
atcacttcagtctcctattagttcagttcatgcagttaattcctgtcctgtttgatatta
ATGAACATTTTAACTCTTCAAGAGTCATCAACGTTTTTCCTCTATTTTGATGTCACAATC
TCCAAAGTTATCAGAAACCTGCATTCAAGAGCACCTGTTAGAGCTTTACAGCTGATTATA
AAACCACCTTCTAAAGAGGACCAAAACAAGACAGACAACAATTATTTATGGAGGACAAAA
GGTTTTAGGGTAGCCATAGTTAAAGACACAATTGATGACAAGG
gtatctgttacctctgtggcacacaataattttaacataacaattataattattaatgat
aacatacactaagatatatcagaattataggagtcttccataactttggaacacatacca
ataatatatttatgcacatacagcccaaagaaagccaaacaccatttcatgtttgacaat

Exon  5 +      17123      17154   2   Internal     32    86        Good
tatccacattctcatgcctccttataatctttttaccaaaagtatattttactttcctta
cacaacttgcatgtaaactgttttttcaatagtcttaaatacacattacattgttaattc
ttagcaaccttttcttttggtgaaaaccttggtaaatttgggattttaattatatactag
GTATGGAGCCTACGACCTAGACAGAAATGCAG
gtaaggtctgacttattctagcatctagctccatgtgtcctaggccttacctagctgcaa
agcaggcaagttgtacagctaagagtcatagtggcattttataaagcatttaggaggcct
aatcacctttaaattgtacaacatttcttgcataaatttcctttcataaattctttcaca

Exon  6 +      17867      17914   0   Terminal     48    63    Marginal
ttatttttataactttctgtatatctctcttatttcctggtttcttttaccttgttttat
atataacctttaaataagctttgaataagacaacaattagttacccttggccaggcgtgg
tggctcacgcgtgtaatcccagcactttgggaggctgaggcgggcggatcacaaggtcag
GAGATCAAGACCATCCTGGCTGACACGGTGAAACCCCGTCTCTACTAA
aaagtacaaaaaattagccaggcgtggtggtgggcacctgtagtcccacctactcgggag
gctgaggcaggagaatggtgtgaacctgggaggtggagcttgcagtgagcagtaattgtg
ccactgcactccagcctgggtgacagagcaagactctgtctcaaaaaaaaaaaaaaaaaa

Exon  7 +      20006      20182   1   Internal    177    66    Marginal
tgctcaaaaagataaggccctaggagagagagaaataaaaccaaaaacacgaaggccttt
taaaggccttcacgcccccgtgcgcacacacacacatatgcacatacacattttggatgt
tagcttttaattaagctgactcccaatcattgagcttcaaaaaatctttctccttcccag
AGGCCTCTCAGCAGAGATGGACCCAATACTTCCCATTTTCAAGTTTACATGGTATCAAAA
GGAACAAGACAGACACACAAACAAATGGAAACATTTCAGAAAAACCCAAGGGGAAGTGCA
CTACGGCAAAACAGACTCTCAAAACTAACGCAAAACCTGATATCAACCAAAGGGAAA
gtgggtgtatgagccagccctgttgcttcccttggcagtaccggataaatggcttaacca
gcccaaatgggaaaacaataggctcctggcctaagatcccattgactcaccctttgagca
cgtccgctccttatctctgttcttccccagtagagaaagggacgtgtagatttgcacata

Exon  8 +      20336      20541   1   Internal    206    60    Marginal
caaaacctgatatcaaccaaagggaaagtgggtgtatgagccagccctgttgcttccctt
ggcagtaccggataaatggcttaaccagcccaaatgggaaaacaataggctcctggccta
agatcccattgactcaccctttgagcacgtccgctccttatctctgttcttccccagtag
AGAAAGGGACGTGTAGATTTGCACATAAACAGCCCTCTGGAGGGTCCCCTGGGGAAACCT
CACCTGACAGCTGCTGGGATCCTCCTGAAGACTGTCTCATCGCAAGCTACCAGCCGCTGA
ACGCGGCACTGTCCTTATCTTCTGGCTGGCGACTTTTTTGTTCCCAGACCAAACTGAGGG
TGGGGCTGCCCAATAATGAGATGCAG
gtgaatctcgctgcccaataagaagatgcaggtgaatctcgctgcccaataatgagatgc
aggtgaatctcactgcccaataatgagatgcaggtgaactggggaggaagagagttttta
tttctgtaactggttacaaggagaaggcctggaaattatcaccagaccaactcaaaatta

Exon  9 +      30604      30711   0   Terminal    108    52    Marginal
cctcccaaagtgttgggattacaggtatgagccacgcacctagcctaaaacttattttct
tactggtttccttgaagattacaattaccttcttaagtatctaaacaggtagttttataa
taccggcagaatttcattgcaatccaaatactgtgctcctgtaccactccatctctccag
CTTTCTATTGTTGCTGTCATAGATCACATCCTTGCACGTTGTGTGACCACTGACGTCGAT
CTTAAGGACATGTATGTGTATGGAGCAAGGTTGACTTGTGATGGTTGA
ttttatgtgtcaacttggttacccagatacttggccaaatattatcctagatgtttctgt
gaaggtgtgtttgttgttgttgttttgttgttggttttagatgggattaacatttaaatc
agtgggctttgagtcaagcagattacccccttaatgttggcaggtcccatctaatcagtt

Exon 10 +      32527      32658   0   Terminal    132    57    Marginal
aggaacccaaagtggccaagtggcagtcttcaagttacacagaatcactgttgtgtctcc
tcatggaatcattcctccctctgaaactcagagctctagcaaagcataaagcagcaaaaa
ttttgataacaggccactaagggtaatgtggagtggggccattcctgcttccacccctag
ATTCCTGGACACATGAATCCTAGCAATGGAAGAAGCAACCGCATGTATTGGAGGATAATT
CAGAGCATAGACAGTCTCCTGGAGAACCTTGTTGCAGCCCTTCAAGGTACTGCCACCCAG
CTGACATTGTAA
atgagttttcaaaaagccatatcccaccatcttaccaagccagcagttttgagatggtgg
ggaacatggtaagaccagtaattccatgagcacaggcccattatagtgggcgcttcattt
gccatcaagtgagtccctcaatcagaagcaatgctgtgtgaataccatgactgtggataa

Exon 11 +      33849      33928   1   Terminal     80    52    Marginal
gccaccatgctcggtaattttgtatttttagtagagacgaggtttcaccatgttggtcag
gccagtctcgaactcctgacctcaggtgatccactcacctcggcctcccaaagtgctggg
attacaggtgtgagccaccacacccggcctagcggatttcttttcaccactgtccttcag
GGACGTCCCAGACAGTGGATGTGATGCTGCAAACATCCACTTCTAAGGGTTACCTGTATG
TGGTGCAGAACCATCTGTAA
accttcttctggcaactgaccatagggaattcctcatgaggccataagtgcaggccaggc
aaaagaaagtaatattgcaggagtggggatcatgggcacttgggccacttcttcatgtaa
ctttcttgtgccttcagggcctatttaagcccaattttgtatatataccaattacatttg

Exon 12 +      40659      40770   1   Internal    112    93   Excellent
ttagtgacagctgaagggtgggtatcctgaatgagccatgagtgtgctggtgcagaaact
ggccctcagaactccttggcaaactgagttgagctgagtagcagggtcttggggtgggga
ggaagggtcaagggacacatcaggaaaacacattcccaaaaccttatgctctgtcgtcag
GTGAAGTGGAGCTAAGTCCCTGCACCACGACCAGAAACACAGTGTGTCAGTGCGAAGAAG
GCACCTTCCGGGAAGAAGATTCTCCTGAGATGTGCCGGAAGTGCCGCACAGG
gtgagacaggagccgggggctcccagtagctccatggaaccccaaaagacccaagtctcc
ttgtacccctgtctctcccctgacagcacccgcaaggggcatccttgaggctgtggctgc
ccctcctggtccctctgcgtgtcaccacccctgccccctgcagcagcctctttccacccc

Exon 13 +      41939      42049   1   Internal    111    98   Excellent
cctctgtgtgtgtacccaggtgtcccagagggatggtcaaggtcggtgattgtacaccct
ggagtgacatcgaatgtgtccacaaagaatcaggtacaaagcacagtggggaagtcccag
ctgtggaggagacggtgacctccagcccagggactcctgcctctccctgttctctctcag
GCATCATCATAGGAGTCACAGTTGCAGCCGTAGTCTTGATTGTGGCTGTGTTTGTTTGCA
AGTCTTTACTGTGGAAGAAAGTCCTTCCTTACCTGAAAGGCATCTGCTCAG
gtaggtgctggctgagggcgggggcacagggcactctctgccctgccccctcccacccta
ttcccacagacagaaacgcctgcccctgccccaagtctaagtgcctccagcctggctcta
tcctcctcctcgtggtcacccccatccccacatcccgtgcaccccccaggaccctggtct

Exon 14 +      43092      43247   0   Internal    156    98   Excellent
acagcactgggggcctggccccagcagcgggtcctggatgtgctgagtctgggctgcctg
cggtgacctcactgagagggggtggggatgtcaggtgcagctgcatactgaggaccctgc
agcgagccctaggtgtggactcctgagtcggctttttgccttcccaatgtctttttccag
AGCTCACAACGACCTGGGGCTGAGGACAATGTCCTCAATGAGATCGTGAGTATCTTGCAG
CCCACCCAGGTCCCTGAGCAGGAAATGGAAGTCCAGGAGCCAGCAGAGCCAACAGGTGTC
AACATGTTGTCCCCCGGGGAGTCAGAGCATCTGCTG
gtgagtgggggacagatcattttgtttcctggcatgctgctcacctgggatttcgtagac
agtgggagagggcagtgccttagctctcctggcccaggggaaatggaacctgaaggagcc
aggggactgcaggggatggagcagctgcactgaggtggtgaccgtgccagtctgcaggac

Exon 15 +      45017      45173   0    Initial    157    57    Marginal
aactgtctaatatgttttaatatcttagacagcaaatatgttttcaaaattatttttaca
catcttataatttagaattagataaaatttagaattataagattttctctagtacccctc
ccgcccacatagtcactagactttacaaatattaatttaaattaatacatggttctagga
ATGATTGACATCCTTTCAACATTCAATTTTATTATCAAAGAAGATAATATTTCAAGTCAA
GTGTTCTATTATGACTCAATCGAGATTTGGGAGTTTATTTCAGATAAATTTTTCCTATTC
CTCATCAAAGCTGTTTCTTTGCATTTTGGGTCTTCTT
gtaagtccattttctaatttattatgtctgctgctacttttcttttctttctttctgaga
tgggtctcactcttgtcacccaggctggagtgcagtggtacaatcatggctcactgcagc
cttgaccttctaaggccaagtaagctcggacttaccggcttctgagtagctcggacgaca

Exon 16 +      47396      47709   1   Terminal    314    88        Good
gaggccaggcagtgtgggcgcgctctctgtggatgggaagcgggtgggcactggagcggc
aggtttgcccgcacacggggctctccaggttccccgccttgggttctgggcctgatgtgg
aatcctctgccctttctgagtcccaactcacctggctgtctctgtggctttctccaccag
CTCTGAGACAGTGCTTCGATGACTTTGCAGACTTGGTGCCCTTTGACTCCTGGGAGCCGC
TCATGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGAGGCAGCGG
GCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATG
CCTCTGTCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGA
AGATTGAGGACCACTTGTTGAGCTCTGGAAAGTTCATGTATCTAGAAGGTAATGCAGACT
CTGCCATGTCCTAA
gtgtgattctcttcaggaagtcagaccttccctggtttaccttttttctggaaaaagccc
aactggactccagtcagtaggaaagtgccacaattgtcacatgaccggtactggaagaaa
ctctcccatccaacatcacccagtggatggaacatcctgtaacttttcactgcacttggc

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