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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (28662 bp)
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PERCEVAL Exon Candidates (9 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       3748       3888   0     Single    141    40        Poor
aatattacagaagctcagcatttagtaactacctttcccatccctcctggccccctcagt
tggtttttatataactttttgcttctcaattctttttaagcagaacacttatcttctaga
tatatgagaaagggctatttaagggttagccagtggtagaaattgataaacatttgattt
ATGGAAGCATTGATAGGTTTTGACGTTGAAAACCTGAATATGGGCAAAACTGGAGATGTC
AACGTCTTTGCAGATTTTCCCATAAGCATTTGTGAAGTGCCATGCTTTGGCACTCTGTCA
GGTTGGCACAGAAGATACTGA
agatgtgtgaaagtttgtttttatcatcaaggaacgtgtcctctattttttatttctcct
taggcttttcttcatattctttgacttacctgctttcactattggaagcttgtatttata
tttatattgatgtgtggataatgttcctcagttatttcctcatctgttgacttatatgtt

Exon  2 +       5746       6144   0     Single    399    75        Good
tgggtcactgcatctcttctaacaagtgaaacacacacacacacacacacacacacaaac
acacacacacacatactctaattgtgcctggaagctaggttaccaaagggagggatgaca
attccagatcagcttctaacctcctcccttctgctcaggtcgccttcgtcagacgtcaga
ATGATTCCTTGCAGAGCCGCGCTGACCTTTGCCCGATGTCTGATCCGGAGAAAAATCGTG
ACCCTGGACAGTCTAGAAGACACCAAATTATGCCGCTGCTTATCCACCATGGACCTCATT
GCCCTGGGCGTTGGAAGCACCCTTGGGGCCGGGGTTTATGTCCTCGCTGGGGAGGTGGCC
AAGGCAGACTCGGGCCCCAGCATCGTGGTGTCCTTCCTCATTGCTGCCCTGGCTTCAGTG
ATGGCTGGCCTCTGCTATGCCGAATTTGGGGCCCGTGTTCCCAAGACGGGGTCTGCATAT
TTGTACACCTACGTGACTGTCGGAGAGCTGTGGGCCTTCATCACTGGCTGGAATCTCATT
TTATCGTATGTGATAGGTATGTTTCAAAAAGAAATCTAA
cttgtgtggaatggaagaaatcgcagccctgagtcacagcccttaggttcagttgtaggt
gttgggtacatcacttgatgtctgtgtgtctcatttttgtcatctcgaaaatgtctccta
attacaaaattctgtgggttttttttaagacagtctcactctgtcgcccaggcttgaagt

Exon  3 +      11084      11249   1   Internal    166    86        Good
tcagaagacatttcagaattaggtaattaactaatgagtaagaactagcagtagaggtag
atagatggaaattaaagacatgaatgctggtgaaataatatcctaaagtcatgtatttgc
ctcaaaatgctattgcctttcctaaagctaaataaaaattgaaatgccctttttccgtag
GTCTTTTGTCTTTTGGAGTAAAAGAGTCTGCTTGGGTGAATAAAGTCTTCACAGCTGTTA
ATATTCTCGTCCTTCTGTTTGTGATGGTTGCTGGGTTTGTGAAAGGAAATGTGGCAAACT
GGAAGATTAGTGAAGAGTTTCTCAAAAATATATCAGCAAGTGCCAG
gtaaaatatttgaggttttttttttctccttcttgtttaagaaaatattttaagtgggtg
tattagttcatttttactctgctaataaagacatacccatgactgggtaatttataagga
aaaagagatttaatggactcacagttccacatggctggggaagcctcacaatcgtggcgg

Exon  4 +      12706      12839   2   Internal    134    54    Marginal
gttagtggcaccaccacattctgtagcacagggtgagagagtaaagttttaattttatgt
atatcatcttcaaagagctaataaacacaaccaccttccaaggatatagtctgagaaaag
tcaccagaaggagagttttctgtcaaagtgactttccaatgtgtttgttctctttcttag
AGAGCCACCTTCTGAAAACGGAACAAGTATCTATGGGGCTGGTGGCTTTATGCCTTATGG
CTTTACGGGAACGTTGGCTGGTGCTGCAACTTGCTTTTATGCCTTTGTGGGATTTGACTG
CATTGCAACAACTG
gtaagagcagtgtcttggctcagtgtagaaggagtgttccttgttgtgcacgagtacccg
tgtgtggtagcagagggtccaggaaagagagagggatttcgggtaagaagggcactagtt
ccaggcccagctgtgacacgtgctgctgatgataaaaagaaagaatgcaactctctgccc

Exon  5 +      14169      14212   1   Internal     44    57    Marginal
caagactctgtctcaaaaataagtaaaataaaatgaaataaaatagatggaccaagataa
gaaaagggacaaaagcagaggagaactaccctggagaagaggaagaatttcacacaattt
aatttctttacctgttgatgttttattaagcatacacatcttttgtttatatttccttag
GTGAAGAAGTTCGGAATCCCCAGAAAGCTATTCCCATTGGAATT
gtgacgtctttgcttgtttgctttatggcctattttggggtctctgcagctttaacactt
atgatgccgtactacctcctcgatgaaaaaagcccccttcctgtagcgtttgaatatgtg
ggatggggtcctgccaaatatgtcgtcgcagctggttctctctgcgccttgtcaacaagg

Exon  6 +      16901      17018   0    Initial    118    71        Good
agtgcatttaaaaaataatgacataattattaatataaataatatgacttcataattaca
actgtcatgctgaatattatacaattattttatttccgttcggggatgtaatcttgcatg
aatgtttgccatactgcatgtgtttgctttttattcagtcttcttggatccattttccca
ATGCCTCGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAA
ATCAATTCCAAAACGAAGACACCAATAATTGCTACTTTATCATCGGGTGCAGTGGCAG
gtgagagagagttgacttttcttcagaaacgggggatctttttcatcaaggactctgcat
taaaaatacaaagctaggtggttttcttttttgatttccaagaagttcagtcactttttt
gtgagtgtttcctattttgaattttttggttctgcattttcgtgtgtccagtctttacct

Exon  7 +      20614      20716   1   Internal    103   100   Excellent
agtttatatgacctaaagaacatcttattaactgtgagagatatattttctacactctgg
ttgacttatccttggtactaaaacgaagtggcagtcagatgtccctgacttgaacgttag
taactgtatggaatttcctcctgggccgtttacttcaccgttcttttcttctccccctag
CTTTGATGGCCTTTCTGTTTGACCTGAAGGCGCTTGTGGACATGATGTCCATTGGCACAC
TCATGGCCTACTCTCTGGTGGCAGCCTGTGTTCTCATCCTCAG
gtgagtcacctggtggttctacagggtgtaccatgcacgagggactctgggagtgagaaa
atgagccctcactctcctggcttccagggagccagcagtctcaccaaggtgagaggtcac
atctaacaaaatagcaatgaaaagtggaagaagcgtatctggtctttagcaaagaatcaa

Exon  8 +      24263      24433   1   Internal    171    91   Excellent
cctgcaactggacatctctctcctcagtgaaaaagaagaaagggcaaggcgaagactctt
tgtatttagccaagtagatgtgtacagaagtcagtgttttatcagaatatgctgttttgc
accaagcaatctgggtggagcacagtgtgctgactctgttatctacacatccccctgcag
CTTTCCTCGTGTTGGGCCTGAGTGTCTTGACCACTTACGGAGTTCATGCCATCACCAGGC
TGGAGGCCTGGAGCCTCGCTCTCCTCGCGCTGTTTCTTGTTCTCTTCGTTGCCATCGTTC
TCACCATCTGGAGGCTGCCCCAGAATCAGCAAAAAGTAGCCTTCATGGTAT
gtgtaatgaggattagagacccaaaatactgtattcattttctctgtataattagtttgg
taagtatttttttttttttttttggagatggaatctctctctttgtcactcaggctggag
tgcaatggagcgaagtgatcttggctcactgcaacttttgcctcccgggttcaagcactt

Exon  9 +      27251      27447   1   Terminal    197    90   Excellent
gtgtggcctggttcctaacaatagtggtctgtggcccaggggttggtgacccccgttcta
aagtactacagaaaggaaagagacaaactctattaagttctacattttccacctcaataa
cttaaaagtcattttctgacatacctgaaacattgatttttttttttcctgccccaacag
GCTTCCTGATTTACTTTTCTTATGGCATTAGACACAGCCTGGAGGGTCATCTGAGAGATG
AAAACAATGAAGAAGATGCTTATCCAGACAACGTTCATGCAGCAGCAGAAGAAAAATCTG
CCATTCAAGCAAATGACCATCACCCAAGAAATCTCAGTTCACCTTTCATATTCCATGAAA
AGACAAGTGAATTCTAA
cacttgcaggagcagagctggtcatcgtcttagcatacatatcctacactgagtaaaccg
taacgggatgtcatcagcatgctgggttgtcatgggtttgctgcatacatagttcaccct
aatttatacttactcatctggacagcatctcctcagatggtgaattatgtgcacggggaa

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