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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (42970 bp)
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PERCEVAL Exon Candidates (19 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       4469       4499   0   Internal     31    65    Marginal
gaaccaccgctcccggcctcatttttgtattttttagtagagatgggatttcaccatgtt
tgccaggctggtcttgaactcctggcctcaagtgatccactcgccttggcctcccatagt
gctgggattacaggcataagccatcccacctggcctgtatataatgtttaattctcacag
CAACTTGTAGAGGAAGAGGCTGAGGCTGAAA
gtgagaaagtaattttcctaagattatgtaactaaaaagtgtaaagaaggaatttgaacc
cacatctttcaaactccatagtgaaagcccttaaacactataccatataggcaagtctta
attttgtgtgaggtcttgcattggaaaaggaagtaagtgaatggggggtaatttagtggc

Exon  2 +       6697       6840   1   Internal    144    99   Excellent
tgtggtatcaacagttgtatatgatttaattatttgacagtgcaaactgcaatatactaa
tagggtctcttccatcaatagacttattttgaatcacatgaatatttactcattaaattt
atttttatttttgagtggaagtttcctttccctgtattaaatgtattacttcctttccag
AAATGTCAAATGCAAAAGAAAGAAAACACGCCAAGAAAATGAGAAACCAGCCTACCAATG
TGACTCTGTCCTCTGGCTTTGTGGCTGACAGAGGTGTAAAGCACCACAGTGGAGGTGAAA
AACCTTTCCAAGCTCAAAAACAAG
gtaaaatacacataagagaccaggcatggtggctcacgcctgtaatcccagcactttggg
aggctgaagtgggcggttcatgaggtcaagagatcaagaccatcctggccaacatggtga
aaccccgtctctactaaaaatacaagaattaactgggtgtggtggcgcgtgcctgtagtc

Exon  3 +      10382      10409   0    Initial     28    56    Marginal
tctatcctcaagatatctcattttatatatatacgaatattccaaaatccaaaaaaattg
gaatttgatacacttctggtcccagttatttcagatgagggatacacaacctgtatctta
ctgggtagcttataaataacaaatgtatttctcacagttctgagggctgaaaagtccaag
ATGAAGGAGCGGGCAGGTTTGGTGACTG
gtgtgggcctgccttctggttcatatacagcaccttttcactggttctcacatggtggaa
ggagcgagggtctctgtgagcactcctttataaggatactaatctcattcatgaaggctc
taccctcatgacctaatcgcctcctaaaggccccacctcctaataccatcacctcggggg

Exon  4 +      10907      11123   0    Initial    217    54    Marginal
catcctgacatgattaccttgtgtgctacctactagctttgtgacctcgagcaagttaat
tcaccttcctacgtaagattcctctttaaaaataagtagtaatagccaccttacagggtg
actataggattaaaaacatggtcaatgttgccacccaacaaatattagttctccactata
ATGTTTATCTCTGATAAAGGTGACATGTTTCTTTTTGAAAATATACTAGAGCCTCATCCT
GGAACTTCACGACAGCGGCAAACCAGAGTCAACCCCCATTCTCTGCCTGACCCTGAAGTG
AATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAAAAAGGGAGGATGGAAAGCAGGTCCC
GAGGGCACGTCTCAGGAGATCCCCAAGTATATAACTG
gtgggtactcataaagaggtgcagtttgcttgtattttgaactctcgtgtctagtgcagc
aacaaactgccctccttgtggtcctggctctgcctcccctacctctcctctcctcctcct
actttagacccttctcgcctctagcctggactttggccagagcttccttgggcttgatgg

Exon  5 +      11726      11901   1   Internal    176    76        Good
acactaccacaattaaaccctatattccttgtaccttgtacctataccttagatatgctt
tctggtctctctttacgccttcttggtggaggaattcagttaagtttccccagcagcctg
tttattctccagtgttaattcaagattggtgtttaatgactttgtcatctccttcaacag
CTTCTACTTTTGCTCAAGCACGAGCTGCTGAAATCAGTGCTATGTTAAAAGCTGTGACCC
AGAAGTCTTCGAATTCACTGGTTTTTCAGACTCTGCCACGGCACATGCGACGAAGAGCCA
TGAGCCACAACGTCAAACGCCTTCCCAGACGGTTACAGGAGATTGCCCAGAAAGAG
gtaggagttccacttagtgtaaatgtttagattagtagctcctagaagaaattgagaagt
attgacctaatagaatttattaaaaatgaaaaccaaggctgggcatggtggctcacgcct
gtaatctcagcactttgagaggctgaggtggtcagattgcttgagcccaggagttcaaga

Exon  6 +      13408      13587   0    Initial    180    89        Good
gatctataaaatattccacttaatctaaagttatttgtttgcattcctgaccgttaactc
tgttttgagattcttacaaactgggatatgtccctctacttgaaactataggcggagaaa
gccgtacatcagaaaaaagaacattcaaaaaataaatgccataaagctcgaagatgtcac
ATGAACCGGACGCTAGAATTTAACCGTAGACAAAAGAAGAACATTTGGTTAGAAACTCAC
ATCTGGCACGCCAAGCGGTTTCATATGGTCAAGAAGTGGGGCTACTGCCTTGGGGAGAGG
CCAACAGTCAAGAGCCACAGAGCCTGCTATCGAGCCATGACGAACCGGTGCCTCCTGCAG

gtgagcttttccagtgggctttttttgttatttttgtttgatccttttccatagaggcct
ttagaatagtttatgatgtgccaagccccgtttatgtgattattcattttaaaaataatt
cctgagcatgaagcccgggtcctttgccagatgctggagatcaggcagcctaaagttagg

Exon  7 +      13904      14012   0    Initial    109    43    Marginal
gggtcctttgccagatgctggagatcaggcagcctaaagttaggggggtgactgacatta
atcaaacgatttaccagatatgtggttgtaagggaaaagcatacagtatgatgagcattt
ctaacctaactggaaggcgtcccccagaagtgctgtttgagctgagctctaagggataag
ATGGGAGGAGAGGGGGAAGGCAGAAGGAAGCCAGGTGAGAGTGAAGAACTGGAATCAATT
CTGTGTGACAGAGAAGAAGAGAAGGAGAACAAGGCAACATCAGGGCAAG
gttagcctagagaaaagagtaggaaccaggtcgtgcaggtcttgttgatcatgtcaagtt
ttattcactatagattaatctaacagtcgttcatcaataacagatatttgagaatcaact
gtgtaccctgaacagggttcagaatgctggtctaggtgtttatgggtcagtgggatgctg

Exon  8 +      17310      17397   0   Internal     88    61    Marginal
attttttccactaaaccatcgggcaggagaaggtttagattttgacttatgagaacatag
ctttagcaatttgttttgtgtcttaggcctctaaaggttttgtgatacggcttttggctt
cttagcagttttgcctgtgtaaattcctaagtacttaattgtgtctcccgctttgtgcag
GATTTATCCTATTACTGTTGTTTGGAGTTGAAAGGCAAAGAGGAAGAAATACTAAAGGCG
CTTTCTGGAATGTGTAACATAGACACAG
gtaaacttgttttaaagctgagttctattttagtctatgtatatttattcatttcataaa
gaagtgtctactgtaagcattttggaattcaaacatatagaaaagtgtgtgagacactaa
tcattcccaatgaaaatgttaacttaaaaacagttgggttggcttttaaataatttctaa

Exon  9 +      19843      20121   0   Terminal    279    63    Marginal
ctgatctcaggtaatctacccacctcggcctcccaaagtgctgggattacaggtatgagc
caccgtgcctggccaaaaatgttaatttttaaagagatttaaaaaaaaaaacccaactaa
atttgtcgtaatatatttaaatttcaagattttaaagtgaatgtttaaatatatttttag
GATATCTTAGAGGAAATAAAAGCAGCGTGCCAGTGTGTGGAACCCATCAAATCAGCTGTC
TGCATCGCTGACCCACTTCCAACACCATCCCAAGAAAAAAGCCAAACTGAATTGCCTGAC
GAGAAAATTGGCAAGAAAAGAAAAAGGAAAGATGATGGAGAAAATGCTAAACCAATTAAA
AAAATTATCGGTGATGGAACTAGAGATCCATGTCTACCATACTCTTGGATCTCTCCAACC
ACAGGCATTATAATCAGGTATGAGTTGAATTTGCTTTGA
acctactgaacattttcagtgaagacctgctccatttttgtcagtggcacagatgttgtg
tgatgaaagtttccattttaagatgttctttctttttcagcgatttgacgatggagatga
acagattccggctgattgggccactttcccactccatcctaactgaagcaataaaagctg

Exon 10 +      20222      20327   2   Internal    106    83        Good
ctagagatccatgtctaccatactcttggatctctccaaccacaggcattataatcaggt
atgagttgaatttgctttgaacctactgaacattttcagtgaagacctgctccatttttg
tcagtggcacagatgttgtgtgatgaaagtttccattttaagatgttctttctttttcag
CGATTTGACGATGGAGATGAACAGATTCCGGCTGATTGGGCCACTTTCCCACTCCATCCT
AACTGAAGCAATAAAAGCTGCTTCTGTCCACACTGTAAGAGTAAAA
gtgactgtagtgttttattctaatcatgtttttcctgtcaaatttgtgaaacctaatata
taatttggtaacattttgggccatggcttttagatgtttatttccctacttattatgctt
attatcaaagattttgttatctttcacttctcctagaagaccacaactaagtggatatga

Exon 11 +      30526      30792   0    Initial    267    45    Marginal
gaataatctctagaaaatgttaatacaaagactttttcttgaaatgatgatctcatggtt
gaaatatgtttttcttttattgttttcttttcccttaaatgttctctgtctttaatttta
ctatgactggggaccttccagggccagacattgtgtaagatgctgggatagatgacttag
ATGTGGTCAAAGAAGTACAGGGCACTCAGGAAACCTCTAGAAGGGGTACTGAGCTCAGAT
GAGAAAAATGAGGCCAGCCTCCTGATGGAAGAGCAGGCATTTGAACTGACTCTCAGATGG
GAGCCAGAAGTCACCAGACTTCTTGGGGGCAGGGTCAAGGTTTCAGTGAAGATAAGATTG
CAGGAAGTAAGAAAAGCATGTACAGGAGCCCAGGCAAAAACCAGGAAGACTCTACAAGTG
GATCAGGAGCTAGGAATCAGGAATGGG
gtgagagaggaagctgaagacacaaatggggctacagcatgaaagaccttgaagcctttt
caggatttggactggagatgtgggacacccttgaaagttttaaggttggctgtgacatga
tgagatttcactctgacagcagtgtggggttggagatggggggtgaggaagctggagaga

Exon 12 +      30831      30954   0    Initial    124    60    Marginal
agaagtcaccagacttcttgggggcagggtcaaggtttcagtgaagataagattgcagga
agtaagaaaagcatgtacaggagcccaggcaaaaaccaggaagactctacaagtggatca
ggagctaggaatcaggaatggggtgagagaggaagctgaagacacaaatggggctacagc
ATGAAAGACCTTGAAGCCTTTTCAGGATTTGGACTGGAGATGTGGGACACCCTTGAAAGT
TTTAAGGTTGGCTGTGACATGATGAGATTTCACTCTGACAGCAGTGTGGGGTTGGAGATG
GGGG
gtgaggaagctggagagagactgtgggttggatggccttaaaaagacccttgaaatattc
taggtatgacataatgggggcctgaattgtggcagtgtggctagagtggagagggtgatg
tttaacgcatattcctggaaggtgaaattgacaaggcttggtggttggttggaagatagg

Exon 13 +      32176      32367   0   Internal    192    73        Good
gaaaatatctgtaggaggaataccttatacttaaaatggctcacatttatttatttagaa
cgtttttctcttgcttttttaaaagagcatttaattttctaaagctgcttatagggagac
ccaggaggatctcccagaagactagggctatttgtcttgaattattttcttccactttag
GATTTAAACCGGATGAGGAGTGAATTGCTGGTGCCTGGGTCACAGCTTATTTTAGGTCCC
CATGAATCCAAGATACCTATACTTTTGATTCAGCAGCCAGGAAAAGTGACTGGTGAAGAT
CGACTAGGCTGGGGAAGTGGCTGGGATGTCCTACTCCCAAAGGGCTGGGGCATGGCTTTC
TGGATTCCATTT
gtaagttactttttgattctaacagttgcaatatttaaaatacattcctaataaatgcta
agtactcaaaatgttccagactttatgtacaacttaggaggaattgagtggtgtatttct
gcccttagagctatagtcctggatacaagatacttcatacatatagtccctggagccagg

Exon 14 +      33846      34000   0   Internal    155   100   Excellent
tgaagcatgacgaagctcgattttattcatttttactattgcatggtaatccattgtgtg
tatttctatccattctccttttgaggggcgtttaggttgtttccattttcccccatataa
acattaagcaattcactttaagttggtagactgacagtatctttttgacatttcttttag
ATTTATCGAGGTGTGAGAGTCGGAGGGTTGAAAGAGTCTGCAGTGCATTCTCAGTATAAG
AGGTCGCCTAATGTCCCAGGCGATTTTCCAGACTGCCCTGCCGGGATGCTGTTTGCGGAA
GAGCAAGCTAAGAATCTTCTTGAAAAGTACAAAAG
gtaagaaactggcttctctaatttgataatgtattaaggaaaagagaagtgcctgcttat
attggtatcccaaacattaggatggctttggtaatttcatagacttttcagtgagttcag
cattactgagaaataattaagaagatattacttaagtgaggagattgtcttatatctatt

Exon 15 +      35149      35204   2   Internal     56    88        Good
tttatttgttgtctgatgaatgactggttgaatattgtagttccttgatggtgagcttca
tgagggcagaattgtgttttcttgttcattgctgcaaccataactatagagacaggcagt
ctgcctggcttgcttttttttttttttttttttgaggcaggatctcactctgtcacccag
GCTGGAGTACAGTGGCGTGATCATGGCTGACCACAGCCTCCACCTCCCGGACCCAG
gtgatcctcccacctcagcctcctgagtagctgggactataggcacctgccaccatgcct
ggctaatttttgtagagatgaggttttgccatgttgcccagggtgttcttgaattcctgg
gctcaagtgatccacctcctttggcctcccaaagtgctagggttacaggtgtgagccacc

Exon 16 +      35772      35863   0    Initial     92    52    Marginal
tcagagctttttatgcatgcaaattttccatagatatacatatttttttaaagaatggta
ttacatacattattttgaaacctgtctttttcgtttaacaatatggtatgtatggtttta
ccatatcaaaaaatatgactctaaaccaagtgttgacaaacttttttggtagagggccag
ATGATAAATATTTTTGACTTTGTGGAGCCCTCGGTCTCCATGGCAACTACTCGACTCTGC
CACTGTGGCTCCAAAGCAGCTGCAGATGACAC
gtaagagaacgagcacggctgtgttccaatcgtgctttatatatggaccctcggatttga
atttcatataattttcatgtgtcgtgaaatattattcttttgctttttcaaccatttaaa
aacgtagaaaccattcttagctcatgggtcatacaaaaacagacagcaggccacatttgg

Exon 17 +      39411      39773   2   Internal    363    72        Good
cagcctattattctttatcatatgtttcttggaaagcttttgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgttttaaaatagagatgcattataatggttataat
tattttagttttccaatcctaaattgttcaacattggttctcctgtatgtttttctttag
ACGCCCTCCTGCAAAACGGCCCAACTACGTTAAGCTTGGCACTCTGGCACCTTTCTGCTG
TCCCTGGGAGCAGTTAACTCAAGACTGGGAGTCAAGAGTCCAGGCTTACGAAGAACCTTC
TGTAGCTTCATCTCCAAATGGTAAGGAGAGTGACCTAAGAAGATCTGAGGTGCCTTGTGC
TCCCATGCCTAAAAAAACTCATCAGCCATCTGATGAAGTGGGCACATCCATAGAGCACCC
CAGGGAGGCAGAGGAGGTAATGGATGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGAT
CACAGACCAGGAGGCCAGTGAAAACCATGTTGCTGCCACAGGGAGTCACCTCTGCGTTCT
CAG
gtaagtgtcggtgacttctgggtacattttggattatttattttaatattgaagaggcta
caggatgtaagcgttatcactgtttgtttatgcaaaatccaagtgaatttataggctttc
tggaagggaaagccagtcttttatatttcatagagggctcagggaaacagcttaataata

Exon 18 +      41119      41419   2   Internal    301    68    Marginal
acaaaatatcctcaaacgtatgtctccaacttcatgtaggagtagaaaattactgaagca
actgtcagcctggtgtgggcccagttctgaggatagtcggggaggccggcgagctcccgg
cagaggccagcaaggattgaccagagaggcttgcctgtccatcttgggccacttccccag
GGCCCTGGTTTGGGTCAGCCTGTCCCTGCTCAGCAAGGGCAGCCCCGAGCCTCACACCAT
GATCTGTGTCCCAGCCAAGGAGGACTTCCTCCAGCTCCATGAGGACTGGCATTACTGTGG
GCCCCAGGAATCCAAACACAGTGACCCATTCAGGAGCAAGATCCTGAAACAGAAAGAGAA
GAAGAAAAGGGAGAAGAGGCAGAAGCCAGGACGTGCCTCTTCTGATGGCCCGGCGGGGGA
AGAGCCCGTGGCTGGGCAGGAAGCTCTGACTCTAGGGCTGTGGTCAGGCCCTCTGCCGCG
T
gtgacgttgcactgctccagaactctcctaggctttgtgactcagggagatttttccatg
gctgttggctgtggagaagccctggggtttgttagcttgacaggcttgctggatatgctg
tccagccagcctgcagcgcagaggggcttagtgctactgaggcctcccgcctctctgcag

Exon 19 +      42068      42224   0    Initial    157    43    Marginal
gtgtagttgtggctgaaaataatgagaagctctacgagttatcatcccctttttttgtta
gaaacaaagggcttgtcaggtctatttgaaaaacctcatagtcatgtgataagcaacaat
agatgtttaatgatttcactgttatagcagaagacaagagaagacgcttggcctctgtac
ATGAAATATGGGCTCCTGATGGACCTCATTCAATTCTGTACTGTGATTTCCATGCCGAAC
AACTCAAGCCTTAAAGAGAGAAATCATGGACAACTGATTTCTGCCTGTTTTCAGGCAGGC
ACAGTTTATGGCGTCAGTGCTAGGCTGGAATTAGAAA
gtgggggtctatgacgtggacttcctgactctttgatctctttgttgttgaccaacactt
gatcctactagttacttaatttttttaagtaaaaaattattattattttgtttctgcaaa
gattttctcaaagccatagaggagcatttctcagaatatgttctatgatatgtgtcacct

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