-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (54466 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (17 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 15647 17830 0 Single 2184 94 Excellent gagaccatttcagctgcagctgaggaaaatgaaatgttcattttatttggtgccttgtct ggggagcacactaactcttctggaaacgtgtcagtgaaacagagatcgttttgtggaata gcaacccatggttatggcgagtgacccgacgtgatctggggggcaggctgcagaggactc ATGACAGGCTATACCATGCTGCGGAATGGGGGCGCGGGGAACGGAGGTCAGACCTGCATG CTGCGCTGGTCCAACCGCATCCGCCTCACGTGGCTCAGCTTCACGCTCTTTGTCATCCTG GTCTTCTTCCCGCTCATCGCCCACTATTACCTCACCACTCTGGATGAGGCTGATGAGGCA GGCAAGCGGATTTTTGGTCCCCGGGTGGGGAACGAGCTGTGCGAGGTGAAGCACGTGCTG GATCTGTGCCGCATCCGGGAGTCGGTGAGTGAAGAGCTCCTGCAGCTGGAGGCCAAGCGC CAAGAGCTGAACAGCGAGATCGCCAAGCTGAATCTGAAGATCGAAGCCTGTAAGAAGAGC ATTGAGAACGCCAAGCAGGACCTGCTCCAGCTCAAGAATGTCATCAGCCAGACCGAGCAT TCCTACAAGGAGCTCATGGCCCAGAACCAGCCCAAGCTGTCCCTGCCCATCCGACTGCTC CCAGAGAAGGACGATGCCGGCCTCCCTCCCCCGAAGGCCACTCGGGGCTGCCGGCTACAC AACTGCTTTGATTATTCTCGTTGCCCTCTCACCTCTGGCTTCCCGGTCTACGTCTATGAC AGTGACCAGTTTGTCTTTGGCAGCTACCTGGATCCCTTGGTCAAGCAGGCTTTTCAGGCG ACAGCACGAGCTAACGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACGTGATA CTAGTGGGAGAGATGCAGGAGCCGGTGGTGCTGCGGCCTGCTGAGCTGGAGAAGCAGTTG TATTCCCTGCCACACTGGCGGACGGATGGACACAACCATGTCATCATCAATCTGTCACGT AAGTCAGATACACAGAACCTTCTCTATAACGTCAGTACTGGCCGTGCCATGGTGGCCCAG TCCACCTTCTACACTGTCCAGTACAGACCTGGCTTTGACTTGGTCGTATCACCGCTGGTC CATGCCATGTCTGAGCCCAACTTCATGGAAATCCCACCACAGGTGCCGGTGAAGCGGAAA TATCTCTTCACCTTCCAGGGCGAGAAGATTGAGTCTCTGAGGTCTAGCCTTCAGGAGGCC CGCTCCTTCGAAGAGGAAATGGAGGGCGACCCTCCCGCCGACTACGATGACCGGATCATT GCCACCCTGAAGGCGGTGCAGGACAGCAAGCTGGATCAGGTCCTGGTGGAATTCACCTGC AAAAACCAGCCCAAACCCAGCCTGCCGACTGAGTGGGCACTGTGTGGAGAGCGGGAGGAC CGCTTGGAATTGCTGAAGCTCTCCACCTTCGCCCTCATCATTACCCCCGGGGACCCTCGC TTGGTTATTTCCTCTGGGTGTGCAACACGGCTCTTCGAAGCCCTGGAAGTCGGTGCCGTC CCGGTGGTGCTGGGGGAGCAGGTCCAGCTTCCCTACCAGGACATGCTGCAGTGGAACGAG GCGGCCCTGGTGGTGCCAAAGCCTCGTGTTACCGAGGTTCATTTCCTGCTCAGAAGCCTC TCCGATAGTGACCTCCTGGCTATGAGGCGGCAAGGCCGCTTTCTCTGGGAGACTTACTTC TCCACTGCTGACAGTATTTTTAATACCGTGCTGGCTATGATTAGGACTCGCATCCAGATC CCAGCCGCTCCCATCCGGGAAGAGGCGGCAGCTGAGATCCCCCACCGTTCAGGCAAGGCG GCTGGAACTGACCCCAACATGGCTGACAACGGGGACCTGGACCTGGGGCCAGTGGAGACG GAGCCGCCCTACGCCTCACCCAGATACCTCCGCAATTTCACTCTGACTGTCACTGACTTT TACCGCAGCTGGAACTGTGCTCCAGGGCCTTTCCATCTTTTCCCCCACACTCCCTTTGAC CCTGTGTTGCCCTCAGAGGCCAAATTCTTGGGCTCAGGGACTGGCTTTCGGCCTATTGGT GGTGGAGCTGGGGGTTCTGGCAAGGAATTTCAGGCAGCGCTTGGAGGCAATGTTCCCCGA GAGCAGTTCACGGTGGTGATGTTGACTTATGAGCGGGAGGAAGTGCTTATGAACTCTTTA GAGAGGCTGAATGGCCTCCCTTACCTGAACAAGGTCGTGGTGGTGTGGAATTCTCCCAAG CTGCCATCAGAGGACCTTCTGTGGCCTGACATTGGCGTCCCCATCATGGTAATAGAGAAA CGAACAGTTCGTTTTGGTGCATGA aatagtatttcactcttaatcccttttccaacttccttcactttagcaatcgtaacttct agcagaggagaatacatgcatactcatgaaaaacctgtatagattcctttcttcctgaag ggtttgcttgctgctttttcaagccttggcagttctgtggctgttactcacttcctaaat Exon 2 + 24522 24619 0 Initial 98 85 Good gtgccactgcactctagtctgggtgacagggcaagactccatctcaataataataatgat gatgatgatgtagtcctctttctatcatcttctctctgtcgctcacctccctcccatcgc tcacctccctccccactcacttcaagctctgttacctaggtcctcctgagctgggtgggc ATGACTGTGTGCCTCTTCCTGGATCTCATTTTCCTCATTCCTGAGTTCTCTGATGGTTCC TCTTTTAAGTTGGAGGAAGGGGATGATGGAGAACTAAG gtcagttgctgtttcctttcttgcctgtgtgatggcttgatgttaagtttcattctcaga tatggatttgctatagggatgtattatgtacgtatatatgttttgttggaggatggagat tgtcgggcttggctgggccggatgtaatctgaaaaggggcatttcaagtgtatttaaatg Exon 3 + 24861 24905 0 Terminal 45 91 Excellent atggatttgctatagggatgtattatgtacgtatatatgttttgttggaggatggagatt gtcgggcttggctgggccggatgtaatctgaaaaggggcatttcaagtgtatttaaatgg ccaaatttcataggtggcaggttccaggccacgattgctgtcccttttcctttgtgatag GAGAAGGTCAAGGGTCCCGTGAATGATATTGTGCAGAAGAGCTAG cgaggcaccgtcagggagccctgtgtgtgagacaggccaagcaaagagtgggcattgctc ctggcttgatggaggtggatgggttttttgctatagaaaactacactaaatactaagagg tttcctaattcctctctatcattctttaagattattaaagatattgaatgtttacctata Exon 4 + 26763 26865 0 Initial 103 95 Excellent agcctcctgagtaactgggattacaggtgccctcccccatgcctggctagatttttaaaa aattatttttagtagagatggggttttgccatattagccaggctggtcttgaactcctga cctcaggtgatccacccgccttggcctcccaaagtgctgggattacaggtgtgagccacc ATGCCTGGCCCTTTTATTCTGATTGCTGTTCTGATTGTTAAAATGCAGTTTGCTATACCT GAACAGCTGTTGTCATCCAGCCCAGAGCAGTTGTGCTCAGAGG gtgagcagagatggcaggcgccctgtgttcctggagtccttagtagttgttctcttgttg cttcttgatatctaagtaatggactttaataaacttactaaaaaaaactagtgtgaaatc taggccaaaacactttgatatttgacctccagctgcatgaccccacctaagtcttctaaa Exon 5 + 30810 30937 0 Internal 128 100 Excellent tttattgaagtataaggcagcttttattcctgaaaggcatatgctagattttacaagcgc ggagatcaggcaaaattattcagtaaatccagccatggtctccttggacctaaatacaga ttttgtttggcctttcataacacagccttaatttttaatgtttttccttcctcatcacag GTGGTCCGTACTGAGAAGAACAGTTTGAACAACCGATTCTTACCCTGGAATGAAATTGAG ACAGAGGCCATCCTGTCCATTGATGACGATGCTCACCTCCGCCATGACGAAATCATGTTT GGGTTCCG gtgagagactaatttccaatcaaaactttaggttgcaagtgacagaaaacctggattagg ctgcaaaatgaattttttggctgatggtaactgagaaccccttgcagatagtcagggctg atgtaggacgtggctggatgcaggctcgtagatggcgttggaggagtccatctctcttca Exon 6 + 31362 31491 0 Initial 130 59 Marginal gattggctagaccctggttacctgcctgttcctggtgctgcaggtgtatcatccttaaat ccaaaccacatgggcagagagtagaggcaacgggtagggtagttctctaaaggaaatagg agggttttgtttttagaggaatgggaaggcaaaagtgacatgttgctgtgtgttggagca ATGGAACAGTGCCAGGATCCTGGACCCAAAAAGATTTGGGGGAAGGAGGGTGTCAGAAGC AATGATTTAAAAGGAAAAAGAAGGGGAGGAGGAAAAGGAGGTGGTGGTAATGATGATGAT GATGATGATG gtaaacatatgttgaacccgtactgtgtgccagggactagcctaggactttgtcttatct cattcatccttctaaaatttgatgacataaattgtagctgtctccatttcatgtaggagt aaattgagatagaagagaacagaaccacgtagaagctagaaagtggcagcagagctctgg Exon 7 + 31779 31868 2 Internal 90 63 Marginal ttcatgtaggagtaaattgagatagaagagaacagaaccacgtagaagctagaaagtggc agcagagctctgggttcaaatgcaggtttgtcacactcccaacctgcacccggccttcaa ctctcctgccttcttgagtcttaggaattgctgaaggatcccacttgagggtcactgcag GGAAGAGGATGGAGTAGATGAAGGCTACTCCAGGTATCTCAGGGACTGGGATGTTGGTTT AGGGACAGTTTGTTACCTGTTAATGGTGAG gtaagtacaaaaattgagggtaagcattcagaaacttgtaaagcaatttgacatttacta tgaaatccaagtatatgattatttttcttgcagttcttttttttacaacatttcttcaat ataattcataccccataaaattcactcatttaagtgtacaattcagtggttttagtatat Exon 8 + 34819 34965 0 Single 147 46 Marginal ttgacagctgtgattaaaaaaaaaatcctggtaaaccgaggtgtattttttttacacgat aatagtagctgactctctccacttgtttttatgaaaggaaaaaagccatgcagtaactcc aggcatgatctttgctgctgcaggtggtagtggtgggggtgggcggtagggagtgtgttt ATGCTGCAGCGTGATGCAGTTTGGAGCGTGCCGAAGGACTGGCGTGGTGAGCATAGTCGT GGAGTGTTAACAGGAGAACTGCCAACCCTTAGATCCAAGAATGATTTTGATAAGGAGCCC AGCTTTAAGGAGTTTGAAGCCTATTAA catagctggcattaacatagcttccaagcccctgatttagggacttcttaccttgcccgt gctattttccagcagatttgcaggtggtgagagaataatgggaagccttttaatgtgtct cttaactgtcattcatgtttgagatttagcctctggtaatggagctggtgaattatcatt Exon 9 + 35352 35501 0 Terminal 150 79 Good taccctgacccttttctcatgcatttgggcatcctttgatctaaaacctttctcttatta atctccccaatttgcttatttcaccttaatgggaatgaaacagacctaagttcaaaggaa agggtaagtctaagaattctttcttctggcaaagatagatcttgactcacttcaacttag GTAGCCAAGAAAGAGGCAGATACAATCAATCATAAGGGACAGAAAAGGTATACCAAGAGA CTTGAGAGCATGTGTCCATACAGAAAGGAATACACAAATGGCCAGAGCAGCGTTATTCGT AACAGAAGTGCAAACAACTCAGAGGGATAA atactgtggttccattatgtgaggcccctaggtagtcattcatagagacggagagtagaa taggggctgccgggctgtgggaaggtgggagtggggattagtgtttaatggggacagagt ttccgtttgggaagatgaaagagttctggagatggatggcagggatggttgcacgacact Exon 10 + 37086 37250 0 Initial 165 77 Good gcttattaaggaagctgaatatgataccttatttgcttttatcctgtttggcttgttgtt gattttgttttattttgaaaggatacgagaagtaaaagcctaagggccagagcttgtaag gtggaggcaataactgtgaacacttctgatgaccctagagctctgtattcaggtctgtgt ATGCACTTGTGTTTTTCAAGGGTGTGGAGAGAAGCTCGGGACCGCATCGTGGGCTTCCCT GGCCGTTACCACGCATGGGACATCCCCCATCAGTCCTGGCTCTACAACTCCAACTACTCC TGTGAGCTGTCCATGGTGCTGACAGGTGCTGCCTTCTTTCACAAG gtaagaaaaagctggtaataatggcatcgacttggtgagagtttcacctttgtgtggtag cggaatgctgccctcagcttagctctcctaacgcttcttacatgtttcttttgtgctaga agtcagttttttctatttttacagacaatgatcaagatgcttagagcaactctgggataa Exon 11 + 38380 38571 0 Terminal 192 48 Marginal ttacccccactgcccaccacacagagcacctcttctgtgccctgagtcttctctgaggac agtgctcccattagccttttcctgtagactttgaggcactcatttccccacatctgtgct ttggcacagggcaggtgtagggaacattttcattgcttaccaatgacacttccctcccag CTGTCACATAAAGTCTCATTTGCAGCTCCTGTCGTCTGTCTTGCTGCCATCAACCAGCCT TTTCATCGTGCCCTGACAGTCACCAAAGACGGTGGCACCTGCCTCCTTCTCTTTGTCTGC ATCCATGCCCTCCATGGTTCTGGTGCCTCCACTGTCCTCACGGAAGACCCTCCCACCACT CTCTCTGCATGA atggtgaagtgtcccggggtctagcctctgttgctcttcttattttccctaggcgttctg tctcacacacaaggttttgaggcttttcttagcatctgcaggctggtaatttcctcatct gtattccagccttggcctttcttgctgaggtctgcgtttgtatatttcattgtttccagc Exon 12 + 42098 42240 0 Initial 143 68 Marginal cattcatgagcaggtgtgagtggctccaacacacccctctgtgggccttgtaggacagtc tgagaactttgccttttactctgagtgagatgggaagtgttggaggctttggagcgaagg ggtgatatgttcagttggtttgagtgttaacacaatcacctgctgcgctgggactagcac ATGGGGAAGAGAATATGGCAGCAGGGAGAATATTTAGGAGCTGATGTGGAGAATCCAGGC AAGAGACGAAGGTGGTTGGCAGCAGGGAGTAGCCAGGGCCGATGGCGAGTACTGACCAGA CTCAAGAATCTGTACAGGAGGCA gtgagggatcgtgtgtttcatggttctgtgatttattgaggtctgagaaaataaccaggc ttttttctctcacttatctttttttttttttttggccattgttagagataaaatagtgtt caattgaaccagcatctgacctagtttgacaaatctttgtattgatttcaaaatcactgc Exon 13 + 42673 42801 0 Internal 129 100 Excellent cactgcagaagatccacacgacaggatgtctcgaatcccctgccccagtccctaagtgcc agtaatacctcctagttactgccacacccaaacagcccctccatccatgcatattttggc tgaaagccaacaacctgtgtcttgtaacagagcatgtggttctttttcttcccctgacag TATTATGCCTACCTGTATTCTTATGTGATGCCCCAGGCCATCCGGGACATGGTGGATGAA TACATCAACTGTGAGGACATTGCCATGAACTTCCTTGTCTCCCACATCACTCGGAAGCCC CCCATCAAG gtgaggtcccaccactggtggggctgtggatgcgtgcatgtttacttcacttgttttgca gtagtgcagcacgtaactgcactgtacctcagagtcctcatttgtacaatagggatgata ctacctacctcatcaaaggattgtctgtgagcttaaatgagttgttactacaggggccct Exon 14 + 42914 43004 2 Terminal 91 50 Marginal acatcaactgtgaggacattgccatgaacttccttgtctcccacatcactcggaagcccc ccatcaaggtgaggtcccaccactggtggggctgtggatgcgtgcatgtttacttcactt gttttgcagtagtgcagcacgtaactgcactgtacctcagagtcctcatttgtacaatag GGATGATACTACCTACCTCATCAAAGGATTGTCTGTGAGCTTAAATGAGTTGTTACTACA GGGGCCCTTCATTCCTAAGGGCAATGGATAG aaatcagaaggtttggaacttgggtgggaaagatgttgcatcattatttttattaatgtc ttactggaataaagcattttcttcagttatgaaacaggctataattcataagagtatttg tagtaactgatttgtcaccagtagaaatcactgatatcttcatatcacaatacctttatt Exon 15 + 50109 50165 0 Initial 57 40 Poor tacctacctatggctctgcaaccaagtacatactaggagtagacttactgagacagctga cactacacacgttaaggcttttggcatctgagaagcgtaggccatctcaacagaatacct gacaatgttctggagacatctggtaggcaggaggcctggggccgggctctggttcctgcc ATGCTCTGCAGGGATGTTGCCCCTGAGGGGATCAGCGTCTTCACCATGGACATGGGA gtgtgggatcggctcagctgcaagggttctgtcagtattagctgggattcccactctgtc tctctctcccgtttccaggtgacctcacggtggacattccgatgcccaggatgccctcag gccctgtctcatgatgactcccacttccacgagcggcacaagtgcatcaacttcttcgtg Exon 16 + 50244 50443 0 Internal 200 98 Excellent acatctggtaggcaggaggcctggggccgggctctggttcctgccatgctctgcagggat gttgcccctgaggggatcagcgtcttcaccatggacatgggagtgtgggatcggctcagc tgcaagggttctgtcagtattagctgggattcccactctgtctctctctcccgtttccag GTGACCTCACGGTGGACATTCCGATGCCCAGGATGCCCTCAGGCCCTGTCTCATGATGAC TCCCACTTCCACGAGCGGCACAAGTGCATCAACTTCTTCGTGAAGGTGTACGGCTACATG CCCCTCCTGTACACGCAGTTCAGGGTGGATTCTGTGCTCTTCAAGACACGCCTGCCCCAT GACAAGACCAAGTGCTTCAA gttcatctaggggcagcgcacggtctggggaagaggatgagcagagggaggaagatggct cccaaggttcctaggcattgcaggaccttgggcacatctgctggtgggtggcccagagcc tctgctggaaggggcagcaggaggagtggaaggaaaccgctgcctttatcttgaagtcag Exon 17 + 52926 53018 2 Internal 93 74 Good aggggcacgccctcctcagcgagaggcagcaaggtggccacagtgtcactggtcaggtgc ttctcaccacgggaaagccgccgacctgtgactcgcttgagatgggaaagcggcgccaca gaccccgggtctccttggctgtctgtgggccgcccctggccaccttgtcctggctcgcag GGTGCAGGAGCGCCTCGTTCTCTGGGTGGCCGGCTTGCTGCTCCGGTTTGGGCTGTCTTA CCATAACACCGTCCCAGGGCTCTGCAGGCCACT gtgagcgctggctccctgggcagtgctcctccgtgtggactgtgcctcaggccagggctc accagctggggtcctgtccggaaggatgggatctttctgggagctgcgccggacagagtg gggagctcctagtttgtggggggaagctttgatatccatgccacgtccatccaccccacc --------------------------------------------------------------------------------