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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4824 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2074       2157   0   Internal     84    64    Marginal
gatgtttctacatggtgtgagataaagatttaaatacatacatatataaaatcatgaggt
agtgtacactataaatatacaattgttaattgttactcaagtctaagtagaggtggaaat
aataaactttcttttttttacttaaaccactctgtgtcactgagctgatttcacctttag
CCTGATAAAATCATTGTCCTCTCCACCCTGATTCCTACAGGAGACTACTCACCCCATAAC
CTCAAAAACCTCTTCATGAGGATG
gtaagtcacctgaatcctgaagtgaattactcgctattccattggaactcatataggaca
ccagaatctagacctccagagaacagcaggacccatcttcagaaaataagaagcatttgt
tccctgagcctgttgaatcaaagtgcaatttctattctttttggaatgttaaaaagtgaa

Exon  2 +       2604       2771   0   Internal    168   100   Excellent
ggtacagatgtatactagcatgaaactgggagaacaggagcattcgagcaaccttgagac
caatgggcctctcttataaaatgcacacctcctctcactgagattgaggaaggtttcttg
tctccgagccttctcccagtagagctataaatccaggctggctcctccctccccacacag
CTGCTCCTGCTCTCCCTCCTCCAGGTGACCCCAGCCATGAGGACCCTCGCCATCCTTGCT
GCCATTCTCCTGGTGGCCCTGCAGGCCCAGGCTGAGCCACTCCAGGCAAGAGCTGATGAG
GTTGCTGCAGCCCCGGAGCAGATTGCAGCGGACATCCCAGAAGTGGTT
gtttcccttgcatgggacgaaagcttggctccaaagcatccaggtgagagaggcaggcat
gcagagctgctaagtctagagggaaggacgggagagaggttccagagttgggtctcagca
gtctatgtcactgaggtggcttcacttagaatctctgggcattgattttctcatctagaa

Exon  3 +       3194       3320   0    Initial    127    70        Good
acgtctgtgaaattcactaagtttcagatatgaagagacagactagttatttctggatct
aaacaagtagacttagttgtaaagagaacattttactctatctacagaagagcttttaaa
aactgcagccaagcctgaggatatgttcaggtgtgtgtgtgatggggcaggaatgcaaaa
ATGAGAGCAAAGGAGAATGAGTCTCAAATTCTGAGTGACAAGCACTGCTCTGCGTGTTTA
TTCCTATCGACTGAGGTTGTTCGTGCTAACGGCTGCAATGCAGCCAGCATCACCTGTCAG
CTAGCAT
gtgacttccccgagattctttttcttacccactgctaactccatactcaatttctcatgc
tctccctgtcccaggctcaaggaaaaacatggcctgctattgcagaataccagcgtgcat
tgcaggagaacgtcgctatggaacctgcatctaccagggaagactctgggcattctgctg

Exon  4 +       3395       3526   0   Terminal    132    74        Good
tctcaaattctgagtgacaagcactgctctgcgtgtttattcctatcgactgaggttgtt
cgtgctaacggctgcaatgcagccagcatcacctgtcagctagcatgtgacttccccgag
attctttttcttacccactgctaactccatactcaatttctcatgctctccctgtcccag
GCTCAAGGAAAAACATGGCCTGCTATTGCAGAATACCAGCGTGCATTGCAGGAGAACGTC
GCTATGGAACCTGCATCTACCAGGGAAGACTCTGGGCATTCTGCTGCTGAGCTTGCAGAA
AAAGAAAAATGA
gctcaaaatttgctttgagagctacagggaattgctattactcctgtaccttctgctcaa
tttcctttcctcatcccaaataaatgccttgttacaagatttctgtgtttccacctcttt
aatgtgtgatatgtgtctgtgtcaagacacttgggatacacgtaccaaaacgcaaaatca

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