GENSCAN 1.0	Date run: 16-Jan-104	Time: 23:39:56

Sequence TRPS1_1 : 262929 bp : 35.49% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    812    966  155  2  2   13   59   163 0.647   4.69
aatcgtggggaatcctgatcaccaactaggtgtcctaagacttcttgccacagataaagg
gcgggggagggggcgcacacgcacacacacatcctgcgtcgtttaattgggagagagaag
ggaaagtaacaacagaaaaggtaaaaggactttgagagttctttaaattgtttctgttag
CATCTCTGAGTGTCTGGGGAACGTCGGTTTGGCGGCCACGCACTGCCCCCCACCTGCCCC
CCACTACCCCAAGGTAAGTCCTCGTCTTTATCACATTATTCCTAACGCGTTCGGATTTTT
CCTCCTTTTCCAGCCCGCACGTTCACAGACGGGAG
gtgggggagggaggaggggggagaggcggggcgggaaggtagccgggtccctgcaccgcg
ccgctctcatttgcggcgctccgactcgggcgaagttctcgcgcagccggctcgccgcgg
ccggggccggtcccggcgggcggcggcggcgggtgctcggagccgggcggggcggcggcg

 1.02 Term +   1178   1257   80  0  2   69   38   121 0.639   2.15
cgggaaggtagccgggtccctgcaccgcgccgctctcatttgcggcgctccgactcgggc
gaagttctcgcgcagccggctcgccgcggccggggccggtcccggcgggcggcggcggcg
ggtgctcggagccgggcggggcggcggcggcggcgcggggacgcgcgctgtctctttaag
GGAGCTCGGTCTGGGGTGGCGCTTTCCTCCGCGAAGGCTCCTTTGATATTAATAGTGTTG
GTGTCTTGAAACTGACGTAA
tgcgcggagactgaggtcctgacaagcgataacatttctgataaagacccgatcttactg
caatctctagcgtcctcttttttggtgctgctggtttctccagacctcgcgtcctctcga
ttgctctctcgccttcctatttcttttttttttttttaaacaaaaaacaacaccccctcc

 2.03 PlyA -   1516   1511    6                              -0.45
 2.02 Term -   2082   1933  150  0  0   77   47   124 0.606   4.13
 2.01 Init -   2802   2599  204  0  0   64   64   154 0.605   9.50
 2.00 Prom -  14618  14579   40                              -6.45

 3.02 PlyA -  14650  14645    6                               1.05
 3.01 Sngl -  22183  21599  585  1  0   30   37   277 0.998  12.73
 3.00 Prom -  23580  23541   40                              -6.25

 4.01 Init +  26580  26907  328  2  1   53   33   304 0.047  18.93
tacatttcataaagctatacctgccatagtgattcctctggtggatctggacaaagtgag
ttgaaaaccttctggaaaggatacatcatttgagataccattaagaacattcatgattca
tgggaggatgtcaaaacatcaacattagcagaagtttggaagaagttgattccagctctc
ATGGATGACTTGGAAGGCTTCAAGACTTTAGTGGAGGAAGTAAGTGCAGATGTGGTAGAA
ATAGCAAGAGAACTAGAATTAGAAGTGGAGCCTGAAGATATGACTGAATTGCTGCAATCT
CCTGATAAAACTGGAATGGATGAGGTGTTGCTTTTTCTTAAAGATAAGCAAAGAAAGTGG
TTTCTTGAGATGGAAGCTATTCCTGGTGGAAATGCTGTGAACATTGTCAAAATGACAAAA
GATTTAGAATATTCCATCAACTTAGTTGATAAAGCAGCATTAAAGTTGGAGATGATTGAC
TCCAATTTTGAAAGAAGTTCTAGCGTGG
gtaaaatgctatcaagtggcattgcatgctacaaacaaatcattcatgaaagaagagtca
gttgatgtgggaagcttcattgttgccttattttaagaaattgccatagacacccccagc
ttcagcaaagacctccactgagcagctatcaacaatgaggcaagaccagcaaaaagatta

 4.02 Intr +  50168  51096  929  0  2  113   72   879 0.142  78.81
aaattgtttgttttagtctcaactttttgctgtttttagaatgggtttttttttttttcc
tagaggaagcatttgattatgcaccttaaaaaactcacataagtaaaatattccagattc
aactgtatctctgtaactttcagataacactgtatctgccttttccctttatctttgcag
ATATGGTCCGGAAAAAGAACCCCCCTCTGAGAAACGTTGCAAGTGAAGGCGAGGGCCAGA
TCCTGGAGCCTATAGGTACAGAAAGCAAGGTATCTGGAAAGAACAAAGAATTTTCTGCAG
ATCAGATGTCAGAAAATACGGATCAGAGTGATGCTGCAGAACTAAATCATAAGGAGGAAC
ATAGCTTGCATGTTCAAGATCCATCTTCTAGCAGTAAGAAGGACTTGAAAAGCGCAGTTC
TGAGTGAGAAGGCTGGCTTCAATTATGAAAGCCCCAGTAAGGGAGGAAACTTTCCCTCCT
TTCCGCATGATGAGGTGACAGACAGAAATATGTTGGCTTTCTCATCTCCAGCTGCTGGGG
GAGTCTGTGAGCCCTTGAAGTCTCCGCAAAGAGCAGAGGCAGATGACCCTCAAGATATGG
CCTGCACCCCCTCAGGGGACTCACTGGAGACAAAGGAAGATCAGAAGATGTCACCAAAGG
CTACAGAGGAAACAGGGCAAGCACAGAGTGGTCAAGCCAATTGTCAAGGTTTGAGCCCAG
TTTCAGTGGCCTCAAAAAACCCACAAGTGCCTTCAGATGGGGGTGTAAGACTGAATAAAT
CCAAAACTGACTTACTGGTGAATGACAACCCAGACCCGGCACCTCTGTCTCCAGAGCTTC
AGGACTTTAAATGCAATATCTGTGGATATGGTTACTACGGCAACGACCCCACAGATCTGA
TTAAGCACTTCCGAAAGTATCACTTAGGACTGCATAACCGCACCAGGCAAGATGCTGAGC
TGGACAGCAAAATCTTGGCCCTTCATAACATGGTGCAGTTCAGCCATTCCAAAGACTTCC
AGAAGGTCAACCGTTCTGTGTTTTCTGGTGTGCTGCAGGACATCAATTCTTCAAGGCCTG
TTTTACTAAATGGGACCTATGATGTGCAG
gtttgtactttgtattgtctctttgtacagaaaaagttattagaaatgaaatgtgaattc
ttatattcatgttaaaaccaaggtcccagtaccagacaggtagcctgctagatctagcag
aagagatggacacactccatagctacttcatacaagtatattcagagttgtctaaagaca

 4.03 Intr +  65226  66355 1130  2  2  105   94   680 0.219  57.65
ctgttgagaaatgaagagtgaatttatttggctctgattattcaagtgatttcataataa
gcaggagtactattgtattttttgatgtggaatacttggcagtaccctccccctcccctg
cagagggcccattgaattaatgacaccttggaagtaaagtccatttcttctgttctccag
GTGACTTCAGGTGGAACATTCATTGGCATTGGACGGAAAACACCAGATTGCCAAGGGAAC
ACCAAGTATTTCCGCTGTAAATTCTGCAATTTCACTTATATGGGCAACTCATCCACCGAA
TTAGAACAACATTTTCTTCAGACTCACCCAAACAAAATAAAAGCTTCTCTCCCCTCCTCT
GAGGTTGCAAAACCTTCAGAGAAAAACTCTAACAAGTCCATCCCTGCACTTCAATCCAGT
GATTCTGGAGACTTGGGAAAATGGCAGGACAAGATAACAGTCAAAGCAGGAGATGACACT
CCTGTTGGGTACTCAGTGCCCATAAAGCCCCTCGATTCCTCTAGACAAAATGGTACAGAG
GCCACCAGTTACTACTGGTGTAAATTTTGTAGTTTCAGCTGTGAGTCATCTAGCTCACTT
AAACTGCTAGAACATTATGGCAAGCAGCACGGAGCAGTGCAGTCAGGCGGCCTTAATCCA
GAGTTAAATGATAAGCTTTCCAGGGGCTCTGTCATTAATCAGAATGATCTAGCCAAAAGT
TCAGAAGGAGAGACAATGACCAAGACAGACAAGAGCTCGAGTGGGGCTAAAAAGAAGGAC
TTCTCCAGCAAGGGAGCCGAGGATAATATGGTAACGAGCTATAATTGTCAGTTCTGTGAC
TTCCGATATTCCAAAAGCCATGGCCCTGATGTAATTGTAGTGGGGCCACTTCTCCGTCAT
TATCAACAGCTCCATAACATTCACAAGTGTACCATTAAACACTGTCCATTCTGTCCCAGA
GGACTTTGCAGCCCAGAAAAGCACCTTGGAGAAATTACTTATCCGTTTGCTTGTAGAAAA
AGTAATTGTTCCCACTGTGCACTCTTGCTTCTGCACTTGTCTCCTGGGGCGGCTGGAAGC
TCGCGAGTCAAACATCAGTGCCATCAGTGTTCATTCACCACCCCTGACGTAGATGTACTC
CTCTTTCACTATGAAAGTGTGCATGAGTCCCAAGCATCGGATGTCAAACAAGAAGCAAAT
CACCTGCAAGGATCGGATGGGCAGCAGTCTGTCAAGGAAAGCAAAGAACACTCATGTACC
AAATGTGATTTTATTACCCAAGTGGAAGAAGAGATTTCCCGACACTACAG
gtgaggcatggggggtggggtcgggaggaatatacaaataaaataatagaaaaaatccat
agaaagagggctgaaccgggaattgttgagagtgattccaatgacttggggaagttatag
gagaagaccacataaaagttcatcacagatttgcaggtgatatagttacagctgtgatca

 4.04 Term +  82624  83248  625  1  1   95   36   660 0.562  54.37
tatatagaactgaaaatgcctgttaattacattccagttttggggtgttaagaatattgc
atttctttctacctactatattgcatgagtaggtagaaaattcaggtgcttaaaggctat
taaaaataaaacaacccttcagaacgctgtctttgcagtaactgttttcttcttctccag
GAGAGCACACAGCTGCTACAAATGCCGTCAGTGCAGTTTTACAGCTGCCGATACTCAGTC
ACTACTGGAGCACTTCAACACTGTTCACTGCCAGGAACAGGACATCACTACAGCCAACGG
CGAAGAGGACGGTCATGCCATATCCACCATCAAAGAGGAGCCCAAAATTGACTTCAGGGT
CTACAATCTGCTAACTCCAGACTCTAAAATGGGAGAGCCAGTTTCTGAGAGTGTGGTGAA
GAGAGAGAAGCTGGAAGAGAAGGACGGGCTCAAAGAGAAAGTTTGGACCGAGAGTTCCAG
TGATGACCTTCGCAATGTGACTTGGAGAGGGGCAGACATCCTGCGGGGGAGTCCGTCATA
CACCCAAGCAAGCCTGGGGCTGCTGACGCCTGTGTCTGGCACCCAAGAGCAGACAAAGAC
TCTAAGGGATAGTCCCAATGTGGAGGCCGCCCATCTGGCGCGACCTATTTATGGCTTGGC
TGTGGAAACCAAGGGATTCCTGCAGGGGGCGCCAGCTGGCGGAGAGAAGTCTGGGGCCCT
CCCCCAGCAGTATCCTGCATCGGGAGAAAACAAGTCCAAGGATGAATCCCAGTCCCTGTT
ACGGGTAGGATGGTTTCATTTTTAA
ataattcatttgttttgaagggcaaaaggaggaacacacattctttctctacaggattgt
gttgtgtgtgaagtgaaacttaatgatctgtctcaatctggggatttatactcctaaggc
caaagtggcagcaagtaactcatgtgtgtttgtgtgtgctgtgcacttacttgatacagt

 5.02 PlyA -  85378  85373    6                               1.05
 5.01 Sngl - 103988 103839  150  2  0   81   43   189 0.737   7.62
 5.00 Prom - 108217 108178   40                              -4.75

 6.03 PlyA - 109321 109316    6                               1.05
 6.02 Term - 125120 124920  201  2  0   29   37   253 0.646  10.71
 6.01 Init - 172848 172789   60  0  0   90   68    39 0.300   3.59
 6.00 Prom - 173776 173737   40                              -4.35

 7.03 PlyA - 173904 173899    6                               1.05
 7.02 Term - 182242 182073  170  2  2   32   44   174 0.768   4.46
 7.01 Init - 188356 188302   55  1  1   32  123    52 0.814   4.60
 7.00 Prom - 188846 188807   40                              -5.85

 8.01 Init + 216013 216051   39  0  0  109   87    46 0.963   6.84
tgcttaaaagccaaaaaacttgaaaagctttaaaagacaaacaatcatagcatggaagta
cagtagtacaagtaggataattcaaaacattaccagaaaactatttgaattttcttaggc
tagcctatttgaatggctgtatccagggtgatactcaaaatacggtattgaatagccagc
ATGGAGGACACTGATGGCCCCAACAAGACATACTGTGAG
gtatgtctcaggctagcataaatgtgcacatacactgtaaaattgtggggtgtagggagg
ttaaaaagtagataagtagaccccactaccctataatttccagggcaccatcatagagtt
gccgacctggggatgaaactcaggcatttatctactttttgaaagcagccaagtggagac

 8.02 Intr + 251774 251896  123  1  0  119  103    63 0.991  10.76
ttaattataatgaaaatcagtggtgcctattaaacacaattgaacctgacctcattatgg
gcagtgtggttttatactgtcattgttgctagtttaaagacaaaactcctgggttgattt
ggtctaactccactgatcatgtgactcacctctgaccttggtttttttcccctgtttcag
AGGCGTAGAGGCTCCGGTGTTTTTTGTGCCAATTGCCTGACCACAAAGACCTCTCTCTGG
CGAAAGAATGCAAATGGCGGATATGTATGCAACGCGTGTGGCCTCTACCAGAAGCTTCAC
TCG
gtaagaacttgttccactctttcaggaaaagctttataaagcagtgttggcctggtctgt
ggtgtgataagtcccattccctggcttgcagtgcctgcccccgcagggttgttttaatac
agtcactttgagtgcacatgtgatttatggtgaagggggcttagatgtgatggggagata

 8.03 Term + 255142 256203 1062  0  0   96   41   836 0.993  70.83
gcactttggttacttcctctgatcctgcttagggcaaaaggaggagatttagtaaatcta
cagcagaaagcctatccctgctttgaacttaagcatggtttatatttgtgaggaattttt
aatgcattttaatgtattttttaatgttttccttttatgtattgtatgtgttctctgcag
ACTCCCAGGCCTTTAAACATCATTAAACAAAACAACGGTGAGCAGATTATTAGGAGGAGA
ACAAGAAAGCGCCTTAACCCAGAGGCACTTCAGGCTGAGCAGCTCAACAAACAGCAGAGG
GGCAGCAATGAGGAGCAAGTCAATGGAAGCCCGTTAGAGAGGAGGTCAGAAGATCATCTA
ACTGAAAGTCACCAGAGAGAAATTCCACTCCCCAGCCTAAGTAAATACGAAGCCCAGGGT
TCATTGACTAAAAGCCATTCTGCTCAGCAGCCAGTCCTGGTCAGCCAAACTCTGGATATT
CACAAAAGGATGCAACCTTTGCACATTCAGATAAAAAGTCCTCAGGAAAGTACTGGAGAT
CCAGGAAATAGTTCATCCGTATCTGAAGGGAAAGGAAGTTCTGAGAGAGGCAGTCCTATA
GAAAAGTACATGAGACCTGCGAAACACCCAAATTATTCACCACCAGGCAGCCCTATTGAA
AAGTACCAGTACCCACTTTTTGGACTTCCCTTTGTACATAATGACTTCCAGAGTGAAGCT
GATTGGCTGCGGTTCTGGAGTAAATATAAGCTCTCCGTTCCTGGGAATCCGCACTACTTG
AGTCACGTGCCTGGCCTACCAAATCCTTGCCAAAACTATGTGCCTTATCCCACCTTCAAT
CTGCCTCCTCATTTTTCAGCTGTTGGATCAGACAATGACATTCCTCTAGATTTGGCGATC
AAGCATTCCAGACCTGGGCCAACTGCAAACGGTGCCTCCAAGGAGAAAACGAAGGCACCA
CCAAATGTAAAAAATGAAGGTCCCTTGAATGTAGTAAAAACAGAGAAAGTTGATAGAAGT
ACTCAAGATGAACTTTCAACAAAATGTGTGCACTGTGGCATTGTCTTTCTGGATGAAGTG
ATGTATGCTTTGCATATGAGTTGCCATGGTGACAGTGGACCTTTCCAGTGCAGCATATGC
CAGCATCTTTGCACGGACAAATATGACTTCACAACACATATCCAGAGGGGCCTGCATAGG
AACAATGCACAAGTGGAAAAAAATGGAAAACCTAAAGAGTAA
aaccttagcacttagcacaattaaatagaaataggttttcttgatgggaattcaatagct
tgtaatgtcttatgaagacctattaaaaaaatacttcatagagcctgccttatccaacat
gaaattcccttcttttgttattctttcttttgatgagtaggttaccaagattaaaaagtg

Predicted peptide sequence(s):


>TRPS1_1|GENSCAN_predicted_peptide_1|78_aa
XISECLGNVGLAATHCPPPAPHYPKVSPRLYHIIPNAFGFFLLFQPARSQTGGSSVWGGA
FLREGSFDINSVGVLKLT

>TRPS1_1|GENSCAN_predicted_peptide_2|117_aa
MRFSRSQTGTRQKAKRLSAWMSHRCQAFNHRPVSPDPRDTWRINRIAEEVCPFLSPYGSA
RAARPCHMGLLQFEVAGFQSSDASDPPKGGEEGGKREQKRRKKERNHTLKKEERKCM

>TRPS1_1|GENSCAN_predicted_peptide_3|194_aa
MNPIWDLARGNQSVKSRRGGSKEEAKEKTRGKRVYGERKPSWEVGRRAGWPGDATRQGRG
SGKKRAGGGLHAAGRAGSAGEGGGEGGCRHRAAAEDERGNRRERAHTTASAGLPAITRPQ
PGRRARVVAAAGPGLLRERTPATHTQLLLCRRCRLGRAADSSLLPRLSQLTLTVAAPESV
KRKWNAISVPDLQF

>TRPS1_1|GENSCAN_predicted_peptide_4|1003_aa
MDDLEGFKTLVEEVSADVVEIARELELEVEPEDMTELLQSPDKTGMDEVLLFLKDKQRKW
FLEMEAIPGGNAVNIVKMTKDLEYSINLVDKAALKLEMIDSNFERSSSVDMVRKKNPPLR
NVASEGEGQILEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNHKEEHSLHVQDPSSS
SKKDLKSAVLSEKAGFNYESPSKGGNFPSFPHDEVTDRNMLAFSSPAAGGVCEPLKSPQR
AEADDPQDMACTPSGDSLETKEDQKMSPKATEETGQAQSGQANCQGLSPVSVASKNPQVP
SDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGL
HNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVFSGVLQDINSSRPVLLNGTYDVQV
TSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKASLPSSE
VAKPSEKNSNKSIPALQSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEA
TSYYWCKFCSFSCESSSSLKLLEHYGKQHGAVQSGGLNPELNDKLSRGSVINQNDLAKSS
EGETMTKTDKSSSGAKKKDFSSKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHY
QQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSS
RVKHQCHQCSFTTPDVDVLLFHYESVHESQASDVKQEANHLQGSDGQQSVKESKEHSCTK
CDFITQVEEEISRHYRRAHSCYKCRQCSFTAADTQSLLEHFNTVHCQEQDITTANGEEDG
HAISTIKEEPKIDFRVYNLLTPDSKMGEPVSESVVKREKLEEKDGLKEKVWTESSSDDLR
NVTWRGADILRGSPSYTQASLGLLTPVSGTQEQTKTLRDSPNVEAAHLARPIYGLAVETK
GFLQGAPAGGEKSGALPQQYPASGENKSKDESQSLLRVGWFHF

>TRPS1_1|GENSCAN_predicted_peptide_5|49_aa
MALIEEPKVTKQIAKRQVVRIVDRSYPTVPSSLQQQEEYTPVAQGQLAK

>TRPS1_1|GENSCAN_predicted_peptide_6|86_aa
MLPQQPLTCCVAQFLTGHRLVVSKVDARLWLERILLDKAFTLRNYYQMQSSTGRKNTLMT
EYAEIKKHKVLLSEFTLEFLPLVSVW

>TRPS1_1|GENSCAN_predicted_peptide_7|74_aa
MQRHSEECSEGKQFLENFGNLSRKEESIDASDFTVVLFQETATATLTFSRHHPDQSAAIN
IKAKSSTRQMTMTP

>TRPS1_1|GENSCAN_predicted_peptide_8|407_aa
MEDTDGPNKTYCERRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLN
IIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGSNEEQVNGSPLERRSEDHLTESHQR
EIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSS
VSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFW
SKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPG
PTANGASKEKTKAPPNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHM
SCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQVEKNGKPKE