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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8422 bp)
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PERCEVAL Exon Candidates (4 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       4826       4920   0    Initial     95    54    Marginal
catcagagccctttgtttggagtcaaaatcccaggaagagtgcatagactgagcagagaa
gagggccagccacctccatagaggcagggagagcagccgagctggagccggaggattcct
ggacatggagaaggcctgcagttttgtcaaggaagcaagcaaagggtctctttctactcg
ATGAAGGTAGTCGGCACCGCCACAGGGTGGACAGGGCTCAGGTCCAAGGAGGAGGAGGAA
GGCACACTGGAGCCGCTCTGGGGCCCAGAGCGTGG
gtgggtggtcccccaggatgaccaggcaggtgtcagattttggggttcaaggagaggatg
ggaggtgaaaaagtgacacatcacgtgagttgctgtgaaggagaaggagctgtgaagccg
agtagacacatgagcgtcgccagctctttgatggaaagtgccggttgaggaggaggggtt

Exon  2 +       5577       5809   2   Internal    233   100   Excellent
ggattgagaggaaggcggagaaaacaggcaggagaaactgaaagggtctcagctggcggg
acaggaagtgtgggcccagggcttggcccgggaggagacaaggggaccaagggcttggca
atggggatgagatcagagagctgcagcttccaccccgggtgccttcctcgccctgcccag
AGCGGCGGCCACACTGCTCTTTCTTGGAAGCCCTGTAACTTTGCGTGCCCTGCTCCATCC
AGTTCGCTCCCAGGACCCCGGGCAGCGGCGGGTGCTGGACCGGGCTGCCCGGCAGCGTCG
CATCAACCGGCAGCTGGAGGCCCTGGAGAATGACAACTTCCAGGATGACCCCCACGCGGG
ACTCCCTCAGCTCGGCAAGAGACTGCCTCAGTTTGATGACGATGCGGACACTG
gtgaggcggatggaggaggaagcgggggatgggactgagaggagggcgggagagtccgcc
caactcaggctgtgggaggacccaggagctcctggtgcctctgccagtgactggctccca
tggctgtgagcaaccacaccccctttctgtgcctcagtttcctctcgtgtatgtgaaata

Exon  3 +       6512       6591   1   Internal     80    96   Excellent
aacccaggagatggaggttgcagtgagtcaagatcgcaccactgcactccagcctgggtg
acagagtgagactgtctcaaaaagaaccaggagggcacatgggcatggggagtgatgaac
cagagaaagctgctgtctttctgggcaagtgccaagcaacggatcacccttgacccctag
GAAAGAAAAAGAAGAAAACCCGAGGTGATCATTTTAAACTTCGCTTCCGAAAAAACTTTC
AGGCCCTGTTGGAGGAGCAG
gtgagaggagggtcggcctgggaggaccccacagggaaggggtgagcctggcccgggcag
gtgttcgctgcgtgggtgggcggaggagttctagagccggccccttgtctctgcagaact
tgagtgtggccgagggccctaactacctgacggcctgtgcgggacccccatcgcggcccc

Exon  4 +       6708       6877   0   Internal    170    83        Good
aacccgaggtgatcattttaaacttcgcttccgaaaaaactttcaggccctgttggagga
gcaggtgagaggagggtcggcctgggaggaccccacagggaaggggtgagcctggcccgg
gcaggtgttcgctgcgtgggtgggcggaggagttctagagccggccccttgtctctgcag
AACTTGAGTGTGGCCGAGGGCCCTAACTACCTGACGGCCTGTGCGGGACCCCCATCGCGG
CCCCAGCGCCCCTTCTGTGCTGTCTGTGGCTTCCCATCCCCCTACACCTGTGTCAGCTGC
GGTGCCCGGTACTGCACTGTGCGCTGTCTGGGGACCCACCAGGAGACCAG
gtgagcatgagacctgctgtccactcccactccctccttcccacagcctccccagacctc
tctcccctcatcctggcttcccctctgtctgcaggtgtctgaagtggactgtgtgagcct
gggcattcccagagaggaagggccgctgtgcactgcccggccttcagaaagacagaattt

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