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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (50651 bp)
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PERCEVAL Exon Candidates (10 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1096       1408   2   Internal    313    51    Marginal
acaaattgccaaatggaaaaagttcttctccatcttcagctagagggaggctggggatcc
cagctctttagaagccggcccgtggacgcccagagaatcccttcggagaccaggtcaggg
tcactgagcttgcccagcagggcgccgcctcggacgccgccccgcctctcaccttgccag
CGCCGCGCTCGGGCCGCGAAGGTGCGTGCGGCGCTCGGTGATTGGCGGCGGCCCGGAGCT
GCCCGGCTGCCATTGGCTGCCCGGCCCCCTTTGTTCCCGGGTCCGGGCCGCAGGCCCGCT
GCGGCGGACTGGGCGGCGGAAGTTCGACGGCGCCGGGCGAGTGGCTGTTGAGCGGCGCCG
CGGGAGTTCCGCAGGTTTCCCGTGTTCGCAGCGGAGCCGGAGGCCAGCTGAACCCGGCCG
TGGGATCCCGGATAGGAGGAGGAGGGGACCCATAGGACGCGTTAACATGGACCTGGAAAA
CAAAGTGAAGAAG
gtaggggggcgctcgtggcgggcggcggctgcttcacctgcgcgggtcgcgcggcgcgcg
gcggccggaggtgccgaggtgggtggggctcgcgggccccccggtgtgagcccggctctg
ggtctgcggtgccccgggcccagggacctggccccctgggtagaggaggtgctcggcggc

Exon  2 +      19526      19646   0   Internal    121    52    Marginal
ctgagagtcattaatatattagctttttcaaataattattttctatttagtgattaaact
ttgagcagatgaccatgctgaataataaccaaactaagacacagttaatctgacacatga
tttgcaataaaattaaaaggtatcttggagccaatctagtttaatttcctcattatctag
ATGAAGCCTAAAGAAGAAAGATCACTTTCAAAATCCCTGAACACGCCAGTGACACTCTGT
GACCAGAACACAGGTTTCCTGACTCTCCTCCAGGGATCTTTCTACATTTTCAAAGTTCCC
C
gttagctctctagtatctataactatatatatatatatatatatatatatatatatataa
tcatttccttaatatttggtaattctcacaacatagatatgacatacaggtacacctatc
ttggttatatttgtccaagggtctagatttcactttctaaacagctagttcgccttagct

Exon  3 +      19989      20165   0     Single    177    49    Marginal
agctagttcgccttagctgaggagctaagcctctctgggctcaccttcctccctgccact
ctctctcgcaccctgggcatcattaaataacaccttccctatttatatccctcaccaaga
gttctccagcccagacatctgtagacatcttgtaggcagaaactaacctacaagatttgg
ATGTCCAAGAATAGTCATAGCCTTGGCTCTTCAGGAAAGGAGAAGAACACTAAGGAGAAG
GTGTGGTCTATGCTGAGGGTAAAGAGAAGAGATGAGAAGAATTCTGGGTCCTGGACTTCA
GGGAATCCTGAATACAAAGTGAATAATGGAGAGAAATTAGAGAAGCCCTTAGAGTAG
atggggttccaaatccttgaactgaaaccaagaggagttgaggaacctcagttcttgtga
cactctgcccaaaataggccctaagaaactgtacttggggcagttctggctgtgaaactc
cttttaccacagattagagtccatatgcttcccttcatctgatatgcatttgacttatga

Exon  4 +      32103      32308   1   Terminal    206    68    Marginal
gtgggagactcaaatataaaacactgtagattagaactctaagaaaaatatttttaaaac
ctaaaactaggtaagtggtaatagcacagatttccacaatagatagctcctggcacctgg
tgctgattttatagtatgttttcttgcagagtagtttgtagctggctcttctccttgtag
AAATGGAGCTCCAGTGTAAGGCTTCTGGAAGGGATGTGGTCATCCCAACTGTTTTAATGA
TGACAGCTCTAGTTGAAGAGCCATCCCACCCTTCTTGGGTCACATTCTTACCAAGGACTC
TGTCACCACAATTCACCACATTGGAGGATGCAGATGAGGCTTTTAATATAGTCATGATTT
TTAAAATTATAACAAATCAATCATAG
gttttctctacttaggaaactgaaaattatatggcatagtatgacttcttaggtatttct
tttttcttaccactagcgttattggtatgttgttttaacctgattttactcacttattaa
caaaggtatgttgggtggttaaaggcattgatagaaaagcagaggcttcctgagattgtg

Exon  5 +      38500      38600   1   Internal    101    52    Marginal
tgcagatgcacgtttggttgacaaaacacactgaatttgttaaaatacttacttagaaaa
ttcagttgaaacgttatggtaccatctaaatcacaaaacttaattcagtaatttccaaaa
atacattattagtgactgataattctgctgctttcctctttttttcaccttccattttag
GTTCAGAATGTACCTGTGCAGTGCAGGTGTTTTACATGGGTAAATTGCATGTTACTGAGG
CTTGGGTTATAAATGATCCCATCACCCAGGTAGTGACCATA
gtacctgagagttagcttttcaaacgtttctccctctcaccctccccactctaatattcc
ctagtgtctgttagttccatctttgtgtccatgtgtactcaatatttagctcccacttat
aagtgagaatatgtggtatttggttttcctttcctgtattaattcacttaagataatgac

Exon  6 +      39691      39964   2   Internal    274    99   Excellent
cgtgttttgtttccttcttgcttaaatatatggatacttattctccctcctaaaaaagga
cttgcctttgcataccatgatatagaataggcctaaaagtattttatgaactataaatgt
atgaacataaatatcaattaggtacaattaatcattttctacttattttcaaaattatag
AAAAATATGTCGTAACTGCAAGTGTGGCCAAGAAGAGCATGATGTCCTCTTGAGCAATGA
AGAGGATCGAAAAGTGGGAAAACTTTTTGAAGACACCAAGTATACCACTCTGATTGCAAA
ACTAAAGTCAGATGGAATTCCCATGTATAAACGCAATGTTATGATATTGACGAATCCAGT
TGCTGCCAAGAAGAATGTCTCCATCAATACAGTTACCTATGAGTGGGCTCCTCCTGTCCA
GAATCAAGCATTGGTAAATGATATGGAACAGAGA
gtttctttattgaagttcctggagtatttatttggggcagtttctttgatgacctaatca
acttcacacatcccagatctgttattcttccggggttctcattactttgacttctgattc
ctgttctagtcttttgaatgtaagactagatacttcataaaatttttccaactccctaga

Exon  7 +      40832      41187   0   Internal    356    92   Excellent
aactaaatctatttagtgtaccgtttttgagttttaacttcttaatatactgtgagggtg
agttgctgctattggatagaacccacttctttcttaagtaacttgcttctgatgtgtgtt
atgaaacatcacactgcctaatggccaatcccagttaacattggcctccttgtggttcag
GCCAGGCAGTACATGCAGATGCTACCCAAGGAAAAGCAGCCAGTAGCAGGCTCAGAGGGG
GCACAGTACCGGAAGAAGCAGCTGGCAAAGCAGCTCCCTGCACATGACCAGGACCCTTCA
AAGTGCCATGAGTTGTCTCCCAGAGAGGTGAAGGAGATGGAGCAGTTTGTGAAGAAATAT
AAGAGCGAAGCTCTGGGAGTAGGAGATGTCAAACTTCCCTGTGAGATGGATGCCCAAGGC
CCCAAACAAATGAACATTCCTGGAGGGGATAGAAGCACCCCAGCAGCAGTGGGGGCCATG
GAGGACAAATCTGCTGAGCACAAAAGAACTCAATATGTAAGTAGAGTGGTCACACT
gttagcctgatttgtatactttacagaatttttttcccttactttgaacttttttgggga
ctattcctctgagtttccaaaagggaataagtatggggaataaataggatttagattcag
tttagacttcccacagagggtcatcgtgtttgaaacttctgtctaaagccaaattttcta

Exon  8 +      42455      42646   0    Initial    192    73        Good
acccaggaggcggagcttgcaatgagccgagatagcaccactggactccagcctgggcga
cagagtgagactcagtctcaaaaaaaaaaaaagaaagaaagaaaagaaatggcagtcttc
taatgactaggttgttctggatggcttccctttcagtcctgctattgctgcaaactgagt
ATGAAAGAAGGTGACCCAGCCATCTATGCCGAAAGGGCTGGCTATGATAAACTGTGGCAC
CCAGCTTGTTTTGTCTGCAGCACCTGCCATGAACTCCTGGTTGACATGATTTATTTTTGG
AAGAATGAGAAGCTATACTGTGGCAGACATTACTGTGACAGCGAGAAACCCCGATGTGCT
GGCTGTGACGAG
gtatgttctatgggaccaccggcatgctggtgccctcttagaccctcatatggtcccttt
acctagaaggcaacaagacttgaccaaacagcagttgctctgtttacatccaaagaagtt
ttaaaaaataaacttctgatatcattcattctgtctgtgttaattgggttgacaaatgaa

Exon  9 +      42989      43156   0   Internal    168   100   Excellent
attgggttgacaaatgaaagactagaaatataaaagattgatttagactaaactaagtga
tagcataagttcaagctttaggttatcattttcaaactttagaccctgagaaagtatgtt
gttacagatataaatctcttattatataaaaatccatctttatttttatcttcttcctag
CTGATATTCAGCAATGAGTATACCCAGGCAGAAAACCAGAATTGGCACCTGAAACACTTC
TGCTGCTTTGACTGTGATAGCATTCTAGCTGGGGAGATATACGTGATGGTCAATGACAAG
CCCGTGTGCAAGCCCTGCTATGTGAAGAATCACGCTGTGGTGAGAAGT
gttctaaggatatggttgcctcagcctgctttaggacttgagtttatgcttttcttaaag
cctcttacaaatgggaaacagaaagcagtcctcctaagtagaaagcaaattattcctacc
acagggtgttaaaatcaaggcaattcaaaaacaatacatgcattgactatgagccacctc

Exon 10 +      47965      48153   0   Terminal    189    86        Good
atattgacctccattaacagttggccaaaaaggttagctagaaggccaccctccattgtg
tatttctgaggttgtcattatgagttttaatttatcatctaaagaaatatgtcctaagat
gaaaatgttaccattacagcttgatctctcaccctcttctcttgtattatttcttaatag
GTGTGTCAAGGATGCCACAATGCCATCGACCCAGAAGTGCAGCGGGTGACCTATAACAAT
TTCAGCTGGCATGCATCCACAGAGTGCTTTCTGTGCTCTTGCTGCAGCAAATGCCTCATT
GGGCAGAAGTTCATGCCAGTAGAAGGGATGGTTTTCTGTTCAGTGGAATGTAAGAAGAGG
ATGTCTTAG
gaggagggcacccagaagtatcgagccatagctatccaaagtggtctgcatttctactgt
aaaatgcaatttgaaaaaaataaaacgcaaaaaaagaaactgtaaaggaaaccaagagat
tttgtttaatttttttggccattttttcttcatcaattttttttcggtctcaacttttaa

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