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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (4156 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +        109        362   0    Initial    254    51    Marginal
ctgtggcggcactgtggctgggcacacccagcagcggcctagctctgcatgcctgtcacc
acctgaccctcactgcggctgctgggcggcattcaccaggattgcacaATGACCCACACCTCCCGTCCTGCCCACCAGCCTCTGGATGGGAATTCCCACATCTACCCA
CCCGCCCATCTGCCAGCTGCCTGCATGCCTAGCCGCAGGGCCGTGTCTCCTGCTGTGGGG
CGCACACTGCTATTGGCACTGGGGACCTCGGGCCCTGGCCCCTCCGTGCTCTCCACCTCC
CGAGCCTCCTCTTCCCGCCCTGCTGTGGCCCTGTGTGTGGTGTGGGTCTTGCAGTGGCAG
GACTCCAGTGGCGG
gtgaggacccactcccgcagccggcctcctcactgctcttgcctccgggcatgggaacga
tgccgtctgctcgtctgcctgagacgctttctactccactccgagagtaggaggtcagcc
ggggccaaatgacatggtggacatcaggcttcccgagatagctgtaggtccctgaggaat

Exon  2 +       1212       2213   0     Single   1002    94   Excellent
tcaacttcactttcacagaaatgcaccaaaggcagcctcgctctgtggtctgcagcgatt
actgcaccaggagaaggcacccctgtacctgcagcacttctgggccagggctttgggacg
ggacgcgagctgaccacctgttccttctttccgcagggtcgcggagcctcgccggccgcc
ATGTGGAGCTGCAGCTGGTTCAACGGCACAGGGCTGGTGGAGGAGCTGCCTGCCTGCCAG
GACCTGCAGCTGGGGCTGTCACTGTTGTCGCTGCTGGGCCTGGTGGTGGGCGTGCCAGTG
GGCCTGTGCTACAACGCCCTGCTGGTGCTGGCCAACCTACACAGCAAGGCCAGCATGACC
ATGCCGGACGTGTACTTTGTCAACATGGCAGTGGCAGGCCTGGTGCTCAGCGCCCTGGCC
CCTGTGCACCTGCTCGGCCCCCCGAGCTCCCGGTGGGCGCTGTGGAGTGTGGGCGGCGAA
GTCCACGTGGCACTGCAGATCCCCTTCAATGTGTCCTCACTGGTGGCCATGTACTCCACC
GCCCTGCTGAGCCTCGACCACTACATCGAGCGTGCACTGCCGCGGACCTACATGGCCAGC
GTGTACAACACGCGGCACGTGTGCGGCTTCGTGTGGGGTGGCGCGCTGCTGACCAGCTTC
TCCTCGCTGCTCTTCTACATCTGCAGCCATGTGTCCACCCGCGCGCTAGAGTGCGCCAAG
ATGCAGAACGCAGAAGCTGCCGACGCCACGCTGGTGTTCATCGGCTACGTGGTGCCAGCA
CTGGCCACCCTCTACGCGCTGGTGCTACTCTCCCGCGTCCGCAGGGAGGACACGCCCCTG
GACCGGGACACGGGCCGGCTGGAGCCCTCGGCACACAGGCTGCTGGTGGCCACCGTGTGC
ACGCAGTTTGGGCTCTGGACGCCACACTATCTGATCCTGCTGGGGCACACGGTCATCATC
TCGCGAGGGAAGCCCGTGGACGCACACTACCTGGGGCTACTGCACTTTGTGAAGGATTTC
TCCAAACTCCTGGCCTTCTCCAGCAGCTTTGTGACACCACTTCTCTACCGCTACATGAAC
CAGAGCTTCCCCAGCAAGCTCCAACGGCTGATGAAAAAGCTGCCCTGCGGGGACCGGCAC
TGCTCCCCGGACCACATGGGGGTGCAGCAGGTGCTGGCGTAG
gcggcccagccctcctggggagacgtgactctggtggacgcagagcacttagttaccctg
gacgctccccacatccttccagaaggagacgagctgctggaagagaagcaggaggggtgt
ttttcttgaagtttcctttttcccacaaatgccactcttgggccaaggctgtggtccccg

Exon  3 +       3968       4156   0     Single    189    63    Marginal
gctggagaccttccacccattgggattttgtaaaacatctactttaaaatgtggccgtga
gaaaagcccccattcctccccaccatctgttcgcctctccccgattttctaggattaaag
tataggcctgcaatcccctacctccaattctaaagcccacaaagctctgaaaacaggaag
ATGTTCCCCCCAAGTTTGCGGCAAATTCACTGGGCAGCGATCCCTGACCTGAAGGGGTGT
GAGAGCTTCATGTCCATGAGGACCCCACCCCTTCTGAAGACGGGCGATGTGGCTGTGGGA
GCTGCCCTGAGCGCCCCGGGGTTCTGTGGCACACTTCCTCCCCACAGCCTGAACGCGCTG
GAATTCTGA
t
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