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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (79339 bp)
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PERCEVAL Exon Candidates (20 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +      31896      32059   0    Initial    164    41    Marginal
tgtaaatgggattctacatttgtagattcagccaactgtgggtaaaaatacttgaaaaga
aacaaaagtgtgtgtactgaacatgtacatacttttttcttgccattattccctaaacat
aatagtttaacaactatttatgtaatatttacattgtattaggtatttagtaatctagag
ATGGTTTTAAAGCAGGGGTCCCTAGTCCCCAGGCCGTGGACTGGTACCCGTCTGTGGCCC
GTTAGGAACTGGGCTGTACAGCAGGAGGTGAGCTCCGCCTCCTGTCAGATTGGCAGCAGC
ATTAGATTCTCACGGAAGCGTGAACCCTATTGTAAGCTGCACAC
gtgagggatctaggttgcacactccttaaaagaatcttttttttttggagacggagtctc
gtctcactgtgttgcctaggctggagtgcagtggcatgatcctggctcacctcaacctct
gcctcccaggttcaagtgattctcctgcctcagcttcctgagtagctgggattacaggca

Exon  2 +      38218      38341   2   Internal    124    79        Good
tttcaatgaagtgttttaaggatttaaccatgcagcacaaatgagcacctttctgtaaat
gccaacagtgtaatatgtgtcatttcttcactgattgttagtttgctgcggattaaaaca
caggtgatcatattcaggctggttagattagtgattttaatatgaaaccattgcttttag
AATAATCATGGGCCAGACTGGGAAGAAATCTGAGAAGGGACCAGTTTGTTGGCGGAAGCG
TGTAAAATCAGAGTACATGCGACTGAGACAGCTCAAGAGGTTCAGACGAGCTGATGAAGT
AAAG
gtataattttatcttttgtgaaaatgaatatacaattaaggataggttttttcccctcct
aagttcaataagtttttatttaaaataattctagccaagtttgtatttacaataagatga
gtgaatacttggaagcttaggttcttgatctgtcttaacattataccatgcacattaatc

Exon  3 +      38928      39026   0    Initial     99    77        Good
gtggtgtttttgtattatttgaatgtgggaaactatagtgtaaaatctatatgcacctaa
gaaaatgttcttgatatttttgaggatacactagatttttaacctgctttacaggtgtta
tacattttctaacaatgaacaatttctcctttcctctccttcatttttttttttaagagt
ATGTTTAGTTCCAATCGTCAGAAAATTTTGGAAAGAACGGAAATCTTAAACCAAGAATGG
AAACAGCGAAGGATACAGCCTGTGCACATCCTGACTTCT
gtgagctcattgcgcgggactagggaggttggttaacataacatgttgtagtaattatca
tcatcttttggtttatgctattggaacatttgtttggttattgggaggaaatcattgacc
tcagggtgtccatctttttattgctatttctttttaatgtgcaactgttaatgactgctg

Exon  4 +      41959      42070   1   Internal    112    52    Marginal
gggcgcctgtagtcccagctactggggaggctgaggcaggagaatggcgtgaacctggga
ggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcga
gacgctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttatactcccatttgtag
TTGTAGAAGTGGATATACTCAGTTTGAAAATGACTGATTTTCTCCAAGTTATTTTGGTAA
AGAATGTCGGACAAAAGTTTACTGAAGTGAGTGCTTTAGATGCTGACTTCAG
gtcagggagctctgcatttgaacccaaagaccacatctccagtatgtggttttcttactg
tgtgtggttttgttttgtttttgtgacagggtcttgctctgttgcctaggctggagtgca
gtggtacaatcacagcagccttgacctcccaggctcaggcgatcctctcacctcagcctc

Exon  5 +      55675      55795   0   Internal    121   100   Excellent
cttattggtgagaggggtcttttattttttgataaattttagagtttgctctctgactag
tattttaaatctggagaactgggtaaagacatgtacacatgaaaaaaaggttgtatttta
gttatttcacatttgatacttagagtaaacctgctttttaaatatatttttttcttttag
GTGGAAGATGAAACTGTTTTACATAACATTCCTTATATGGGAGATGAAGTTTTAGATCAG
GATGGTACTTTCATTGAAGAACTAATAAAAAATTATGATGGGAAAGTACACGGGGATAGA
G
gtgagccatatgcttcttctcttggaaaaaggggctaaagaattgagagacacttttgtt
tatgaagcatatagggcatgagaaaaattttaatattaaaattaagttttgcactgaact
ataagggactgaacctgggcccaggcctaagattttcagtattttccctaactatttttg

Exon  6 +      56643      56783   1   Internal    141   100   Excellent
tgcttcctttgcctaacaccagtcctgaaaatgatcttatcttttcctcccctcatttca
ataataatgttttagtgccagttactaggctatgcctgttttgtccaagtagaaaaagga
tacataaacttttgacattattgcttctcctgtgtgtttctgacatttgatgcgtttcag
AATGTGGGTTTATAAATGATGAAATTTTTGTGGAGTTGGTGAATGCCCTTGGTCAATATA
ATGATGATGACGATGATGATGATGGAGACGATCCTGAAGAAAGAGAAGAAAAGCAGAAAG
ATCTGGAGGATCACCGAGATG
gtatgcctgattattaggattctgtgtagccattacagctttctttcaaaaacagtagaa
agagtagaaatagggcttagtttcttctttctctttttctttctttgttaaatatcacat
tgatagcagtataatcaaaattaacatattatggccaggtagggtggctaactctgtaat

Exon  7 +      58257      58359   1   Internal    103   100   Excellent
tttttgactgactggcattccacagacatgtaaagtatgtgagaagtaagtaaaacacaa
aatagagatgatttcttagaaaatcagctttgttatagagacataattgggtagagaaaa
tgaaagatcaaaaacttgtttacttccattctttttttcctttcatattctcctgtttag
ATAAAGAAAGCCGCCCACCTCGGAAATTTCCTTCTGATAAAATTTTTGAAGCCATTTCCT
CAATGTTTCCAGATAAGGGCACAGCAGAAGAACTAAAGGAAAA
gtaagaatttgttcctttgaggcaatcttgccctgtatggtatgtaactcaccattttgg
tttattacaaatggaatcaatgtagcggatgagccactacactttgtttacagtgtttgc
aagatacttgaagcaacatgtgtacttgtggtactctgcattacaaaatatttcctgtag

Exon  8 +      58956      59054   0    Initial     99    45    Marginal
ttatgttttaggcaagataaacatcaaaagtaacacatggaaaccttttagaaactgttt
tcaaaaaagtgatttttgtttcatgtttacttaaatttttcttggttaatgtcagatata
aagaactcaccgaacagcagctcccaggcgcacttcctcctgaatgtacccccaacatag
ATGGACCAAATGCTAAATCTGTTCAGAGAGAGCAAAGCTTACACTCCTTTCATACGCTTT
TCTGTAGGCGATGTTTTAAATATGACTGCTTCCTACATC
gtaagtgcaattattgtacgttttcattttctatctttgttgtggaattatgttttaaag
cagcttggagagtgctatcatttattacaactagaatttatcatttaatcttgtagttac
tttgacaaatatctttagatctcagtattattatttttactttgttgcttgaggattgct

Exon  9 +      65836      65927   1   Internal     92   100   Excellent
aggaatggagaatacgttgtgatcattcagtaagagcctgaaggaaagttgtatgaagta
acgtaaaccacatattagcaagattataatccattaattgacttttccagtggaactgga
agagtgaaaaagtaagtattttatagttatattagattctttgtttcatttattttgcag
CTTTTCATGCAACACCCAACACTTATAAGCGGAAGAACACAGAAACAGCTCTAGACAACA
AACCTTGTGGACCACAGTGTTACCAGCATTTG
gtaagacttagtgcctaattattgcagagggtacttgagaggactttgcactttggtgga
ggtgatcaagtcagcgttaatgttgtctgcacccatgctgttatgggccatatgatagac
agagctttctcacccatgctgtttcttccatagctcatgtactgcacattttagtccttc

Exon 10 +      66153      66264   0   Internal    112    86        Good
ttgcactttggtggaggtgatcaagtcagcgttaatgttgtctgcacccatgctgttatg
ggccatatgatagacagagctttctcacccatgctgtttcttccatagctcatgtactgc
acattttagtccttcattaatgtggtattattctttttaaaatctgtgttatctcttcag
CAACATTTCAAGGTCTTTAGGATCAAGGACTTTTATGCCTTCCACAAAGTCTATGAGAGT
TGCAAGGCACAGATAGTCCGCTTAGAAAGCAGGCATGCAGTAATCATACGCA
gtagatcccaagcccctctcatagccatatccctctacttgagttttagatgcactgtca
tttcagctatgtgataggttccacagattttttttttttaaatgatggagaacaggtaag
gggttaggaaaatatgaggtagaaaagttgtttttacgggtactctcttatttttaccat

Exon 11 +      67406      67696   0   Internal    291    95   Excellent
attttcagactatcaaaagcatatcaaaacaagtatattagacatgcaaatgattatttg
tgataaatggataatgtgatacattttttgactaacctggcttatatagtattttttttt
ctcttccatcaaaatgagttttagaactttgccctgatgttgacatttttcatttcgtag
GAGGGAGCAAAGGAGTTTGCTGCTGCTCTCACCGCTGAGCGGATAAAGACCCCACCAAAA
CGTCCAGGAGGCCGCAGAAGAGGACGGCTTCCCAATAACAGTAGCAGGCCCAGCACCCCC
ACCATTAATGTGCTGGAATCAAAGGATACAGACAGTGATAGGGAAGCAGGGACTGAAACG
GGGGGAGAGAACAATGATAAAGAAGAAGAAGAGAAGAAAGATGAAACTTCGAGCTCCTCT
GGTAAGACACGTCTAATAACTGGGTTTTACTGTTCTGTGAAAGTTCGTGTT
gtgaggattaaggatgtataatgcattgaataattttcttagttggttagtttcagtata
aagaccagagttatctcaagaatgtgtagctgtgttgtttctgtttcctgcctgcacccg
taccctagcttgtggtgtttgccctgcttggttgtttgaaagctgatgatgcactttatt

Exon 12 +      68164      68301   0    Initial    138    47    Marginal
aaaatgtgaactacgatgggttagtgttttgccgattggatttgagttgtcctcatcttt
tcgcttttttcttaagcacaccctgaattgtacttcttaatattatttccaatcatttct
tgaccagtgcttacatttggttttgtagaagcaaattctcggtgtcaaacaccaataaag
ATGAAGCCAAATATTGAACCTCCTGAGAATGTGGAGTGGAGTGGTGCTGAAGCCTCAATG
TTTAGAGTCCTCATTGGCACTTACTATGACAATTTCTGTGCCATTGCTAGGTTAATTGGG
ACCAAAACATGTAGACAG
gtaagatatccgataaaaatgttgttaaaagagcttcaaacatagagataaaactgtact
cgttgtccaaacaaagaaaattcttggttattactaagctcctattcatctcctaaaaat
aatttttttttcttcccaagagggaattgaatgaaaattattctccaggtatgttacaga

Exon 13 +      68745      68843   0   Terminal     99   100   Excellent
gaccagaatataattacagctacccctaatgtgagggtagggacagcgatgtgtgttata
tccccagcatctagcagtgtcacagaagagacaaagacatttttctggtatgcatgagta
taagaatggtttgcctaaataagactgtcctcatggctctgtgactgtgcctcttgtcag
GTGTATGAGTTTAGAGTCAAAGAATCTAGCATCATAGCTCCAGCTCCCGCTGAGGATGTG
GATACTCCTCCAAGGAAAAAGAAGAGGAAACACCGGTGA
gtctgtcatgaagctccttagagaagtcaacatagatagacactgcaggcaaggcccttc
ctaagggctgttgttggtttctacttagtctatttttaaaaaaccttaaactgccatcaa
aaacagaactatggaatcttatttccactgggaattgctagtatttttctataagaatac

Exon 14 +      71353      71564   0    Initial    212    54    Marginal
aaatggaaaaacaactcagtggtggtctttttcagtgcaaacagctataacttcgctgtt
aatacttccatttccttgtctatatagtagggtaataaggtggttgtgagggttgagagt
cagtgagatgcccagtacagcccttgccacgtatctttctgcaagtttttgcatacggtg
ATGAGTGAAGAACCTCCAAACCTCTCTCTGAAGGTCAAAACCGCTTTCCGGGATGCCGCT
GCAAAGCACAGTGCAACACCAAGCAGTGCCCGTGCTACCTGGCTGTCCGAGAGTGTGACC
CTGACCTCTGTCTTACTTGTGGAGCCGCTGACCATTGGGACAGTAAAAATGTGTCCTGCA
AGAACTGCAGTATTCAGCGGGGCTCCAAAAAG
gtgagcaacaagtcacttctggaagattgtttgtagttagctatttagtgatgcaaatgt
caggattgccttagatgatttagctggggcaaaaagtaaaagtgatccttgaaaggtgca
actgatgagaaagtgttcataattttctctgggtaatgcacccttgggcagtctcttcag

Exon 15 +      73176      73329   0    Initial    154    66    Marginal
atcagaaggctatttgggaagttcacatgacaggtgagtggtaagatggtccagaatagg
aatagataggaagcctttgtaaaggtcacaagaaaattttggatgaaagcataatactga
gccgtgatgaaaaattggcatatgttggggaacacatccctaaatacataatttatagca
ATGATCATCTTGGCATTTCTGCTGAAAATAGACTACTGGACTGACAAGATCATGATAACA
CCTCCCGGTAGTTTCTTGTGTTATCCTGAGGAGGTGGGGTGGAAGAACAAATCCAAAGCC
AAGCTGCTATGGGCTTCAGAGGGAACCAACGCCA
gtgaagaatcagggggtgtcctggggctgaaaatggaataactattaatagaatcacttg
gggaaagtagagggaaaggtatggagaggaagagtgatttggtggtgtccttatattaaa
ttcaggttgaaagtgaattactcgaggaaatcaagggctgaagatacagggaagccaaaa

Exon 16 +      75109      75190   0   Internal     82    55    Marginal
tagtatacagttattctttattactgcgcagaccgaatgggaaagagaacttggctgtag
tgaccctttttgttgcgttttctccagaaggtccagtattcactctgtgcgcttttgtgt
gttctgtcaggcttgatcacctttatccaaaagaattttctcctgtgtctttctttttag
ATTATTTCTCAAGATGAAGCTGACAGAAGAGGGAAAGTGTATGATAAATACATGTGCAGC
TTTCTGTTCAACTTGAACAATG
gtatgtttcagagctgggaggcagtgagttcctgagttgcatgtggcagccttctgccgg
ccgagtgttcagaaacgagggtagaggtcagtgaggtgaccagaaggaggatctccttag
aggcatggggggctgcttgcttgaaaggaactggagcaaggaattcctcagggagcagat

Exon 17 +      76133      76213   1   Internal     81   100   Excellent
cctggaacaatagtgtgttcttccaaatgtcatttcttactgaatgaagctgcttgattt
atttgcttttgcaggcaaaccctgaagaactgtaaccagttgcatttacaaaatcataat
aacttggtttacttataactgaaattattcactgggctgtgcttacttttttctttttag
ATTTTGTGGTGGATGCAACCCGCAAGGGTAACAAAATTCGTTTTGCAAATCATTCGGTAA
ATCCAAACTGCTATGCAAAAG
gtaggtacctttgacgtgagaattggaactcccttttcagtcctgtgatgatggacttga
atacttctgggatagttgtttgttatgtgaacaagtcagttaaccccccgtggcccgtct
tcatgctcactgacaccagtgtgtctctttgcagttatgatggttaacggtgatcacagg

Exon 18 +      76261      76380   0     Single    120    42    Marginal
ttacttataactgaaattattcactgggctgtgcttacttttttctttttagattttgtg
gtggatgcaacccgcaagggtaacaaaattcgttttgcaaatcattcggtaaatccaaac
tgctatgcaaaaggtaggtacctttgacgtgagaattggaactcccttttcagtcctgtg
ATGATGGACTTGAATACTTCTGGGATAGTTGTTTGTTATGTGAACAAGTCAGTTAACCCC
CCGTGGCCCGTCTTCATGCTCACTGACACCAGTGTGTCTCTTTGCAGTTATGATGGTTAA

cggtgatcacaggataggtatttttgccaagagagccatccagactggcgaagagctgtt
ttttgattacaggttggtaaagtacatttctagcatgatctctaagggctttttctactg
gattgtgaactctggacaaaggagggtttttagttctttgcttcttttgatgggtcactt

Exon 19 +      77612      77673   0    Initial     62    47    Marginal
gtcatcattttttccagaccatggttctattttgccttcccagcgtcaggcctaagcatc
ctgatgtggaccagccttcctgggaccacttgcttcagaggcataggggaggctggtcag
gctctgggaatgcttgtagacaggtttgttcacttcagaacttggcagcgtctcaattag
ATGGCCAGCAACACAGACCTATGCATTGCCTTCTATGAATGTGCCGTTATGCAGGCAGCT
GT
gtaattggatgggttttttttttttttttttttttaaagacattttaatgcacccactat
cttcagcaggctttgttgtgttaagtctcagcacatgttggatgggtggccatccagcgg
acatctccttcctgttgtttcagatacagccaggctgatgccctgaagtatgtcggcatc

Exon 20 +      77817      77877   2   Terminal     61    90   Excellent
ttgccttctatgaatgtgccgttatgcaggcagctgtgtaattggatgggtttttttttt
ttttttttttttaaagacattttaatgcacccactatcttcagcaggctttgttgtgtta
agtctcagcacatgttggatgggtggccatccagcggacatctccttcctgttgtttcag
ATACAGCCAGGCTGATGCCCTGAAGTATGTCGGCATCGAAAGAGAAATGGAAATCCCTTG
A
catctgctacctcctcccccctcctctgaaacagctgccttagcttcaggaacctcgagt
actgtgggcaatttagaaaaagaacatgcagtttgaaattctgaatttgcaaagtactgt
aagaataatttatagtaatgagtttaaaaatcaactttttattgccttctcaccagctgc

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