GENSCAN 1.0	Date run: 16-Jan-104	Time: 21:28:34

Sequence AUTS2_1 : 97126 bp : 43.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1203   1254   52  2  1  148  116    72 0.999  14.48
actgcaggtctctctcaagcagtcaactagcaccaccttatggatgatttggggacattg
ctgcttccctgctaggctttcgtaaaatgtagtcaactgatttaaaataatgggaatgtt
gatggtgatgacaatattaatgacaataataatgcttttttcccccttcttgtttttcag
GCATCAGATGCCAGCTCTGAAAAACTCTTCAACACTGTTATTGTAAACAAAG
gtaagacccattcattctcctgagtaatggcttatttttatgttagtttcattgtcattg
cctaggaagaaagaagagctagagtgatctttctcttataattctgaagctactgttgat
gtttcatgtttttgcttgagatggaagtctgcatactttgtgatgcattaacattaacaa

 1.02 Intr +   3740   3786   47  0  2   69   85    38 0.909  -0.27
tagccaagagcaataaaaagcatcataagaaagggcaaatttacaccaggtaacaaacac
aactggggaaatcttcaaagccccagcttatgggacaatctaaccagagtgcaggggagc
tgacacgtgtatccctccacctccagatgtttaagttacacatcacttctccctctcaag
AGACTGGTAGTATTCTGGCCTTAGAGGAGTGTGGCTTTAAGCTGCTG
gtgagattatgctgctgagcctggtggcaggcagatttggtccataaaatttcaccgtgg
gagggcagtgctaatctcacaagctgattgtggtgggggttgggggggcgcagccctgat
gttgggctgcacagtgcggagatgaagctcaggcagaggcagcaggggccgtggctcgag

 1.03 Intr +   4986   5068   83  2  2   78   93    50 0.753   2.94
cagagctgcttgaggaggaaagaaaagaagggaagcctgtctgggaggaaggacaacact
agtcaggcgtcaggagttctgtggagccctctgtttataggatgccagtcctggcatgtg
gctgtggtctaggttaggggaagagaaaaatccctgaattgctctcccttcttggttcag
AGCCCTCCTTCCCAGGATTTAGCCCGTAACCAAGACAAGTCACAGATAGACGATGACAAG
TCAAGACAACTCATAGATAGACG
gtgagaggggcacagtggtgtattttaccccgtgactttctcaccccttctctttccttc
aactttgtctcaaattgcagaactgggtactcctggggaaaagcctcctgagtgagccat
cggggagctgtgcccagctaaatgggcatttctgaatggtttcctccagcagggaatgag

 1.04 Intr +  13821  13966  146  0  2  149   70     2 0.705   4.43
agaataactggtaaagggtgacttgccatttccccgctggtcttgcctcccaggagtaac
tgttatttgaccacatgacccagttacaacctgttacccctgtgtggccagggcctcacc
cccccagagcacaccttcgggtcaggctcatgcctgatttgtgccttctttccttctcag
GGCCCTCCAGGTTGAGGGAAGACAGCTTTACACCTCCACCTTCTGTATTAGCTCCAGGAT
AAACTTGAAAACTGCCTACTCTGAGGGTTTTTTTGGCATTTTAAAAGTTAAGTCTGACTT
TCCGAGCCCTCTCAGCATCCTGCCAG
gtatcttatcttattcaaatatcctaattgcttctggggctgcacatcatcctagcacct
aactgacaaaatagaccttcacctgagggcctcattatgctttctgcctgtgcatcaggc
caaaaatacctccacaatacctgctcgacatcctgggcttccaagtgacaaacaaataat

 1.05 Intr +  30865  30951   87  2  0   54   90    42 0.163   0.94
cactgtgccaggccaggctgtttttaaaacttatgtttcagaggttaaaaatttgtctta
agataaaaagactttcttaatcatctaatgtatcccaggatctatgtcttggttttataa
gacaggctggcagtaaatttcagacctgacctaacaagttaaaatcctactcctgggcag
AAGTCTTCTGTGTTAGTGACAATGTGGAAATGAAGGAAGGCTTCCATTTGTGGATAAGTG
TGATTGGACAAAGGCCAGGATCTGCAG
gtaatacagtggaggaaacttagcaggacctgattgttcagattcttctatgttcccctc
ctctgggaatagggagggcacctctcaaatgatggttttatggtgtatttcaggggaagg
ttagaaaatcctttctaaattttatgacctgctttggggaaagaagggtgggaaggtgag

 1.06 Intr +  32480  32575   96  0  0  132  100   -25 0.688   3.08
agtgctgttccccactactcctctgcctctctccacttcccagttccttcctggtcagga
gcccggcagccccaaagactggtaatagcctggcctgtaccagatgccctgttacttccc
caggggtctcctccttcccacacttcatgatgcccagtttctgttctgttttctttccag
GAACGTGTCCCTACCTGGAATCCCCAGGGGGGCTTCCATGTTCCATTAGAGAACTTCACA
TTCAACCCTCGTTTTCTGTTTTAACCAATCTTGCCA
gtaagtggtgagatccttcagggtaggacccaggtcttactcttcagtaaactcctagtt
tcaggtgttgaaatttggcagtcagtcaggcgttgttgaaatgaccagtaattgtttctg
tactgtaggtaataaagctgcggaaattattctcttcctgaaacctgaagacttcagaaa

 1.07 Term +  32704  32813  110  2  2   79   54    60 0.616   0.37
attagagaacttcacattcaaccctcgttttctgttttaaccaatcttgccagtaagtgg
tgagatccttcagggtaggacccaggtcttactcttcagtaaactcctagtttcaggtgt
tgaaatttggcagtcagtcaggcgttgttgaaatgaccagtaattgtttctgtactgtag
GTAATAAAGCTGCGGAAATTATTCTCTTCCTGAAACCTGAAGACTTCAGAAATGTGAGGA
AGCCAGGCCTCAAGTGCCCTCCTCTTTCAGATGTTAGGATAAGAGGTTGA
gaagttgttgtaattgaatgaactgtataagcacaatgtcatgaacttctaatttcctct
tgctgaagatcatgacactgtttgcccattgtatgtatgtatgtatgtatgtatgtatgt
atgtatgtatgtatttagagacggactctggccccatcacccaggctggagtgcaatggc

 2.02 PlyA -  34324  34319    6                               1.05
 2.01 Sngl -  52165  51956  210  1  0   46   38   272 0.791  13.19
 2.00 Prom -  56349  56310   40                              -6.56

 3.01 Init +  62788  62848   61  0  1   58   82    14 0.850  -0.79
gtcttcccttcatctctggtagcttgttggaggtggtgctgacggccacagccttggcac
cactcctcatgttctagctgtggttaggttgagattgagacagtgaggcaacagaggaga
caagaaagtcaactccagtggcctttccggggccttgggaagcgagcccacgcctgcagg
ATGCCATCTGCAAGCTTGGCTGTGTTATCCAAATTCTTGAGGCTCGTTCAAGAACAAGGA
G
gtaaacagagtcaagctagatatctgtagtacttccttatgtgtctctgatgtgcctcct
taccagcataagtaagtgtgaatgatatactccaagtggtgtcctttggaaaaggaagct
gattttgggagggaatttgaatgtatacttaccaagatagaaagtatttattgatgtctt

 3.02 Intr +  65930  66401  472  0  1   94  113   135 0.846   8.74
tgaccccatttgctgtgggcgcatacccccgcaggtggtggagacaaggacccaagccag
gagggttggtgccaggtcctgttgctggagttgtgtgatagccttggagtttcctttccc
tccttacgccacactcgcatgtcattgcctgtggttttgtctttgctctctcccatgcag
ATCCGGAGTTAGGTGTTGGCACGCTACCAGAACATGACAGCCAGGATGCAGGGCCGATTG
TCCCCAAGATATCGGGTCTAGAGAGAAGCCAGGAGAAGAGCCAGGACTGTTGCAAAGAGC
CAATCTTTGAGCCTGTGGTGCTTAAAGACCCCTGCCCTCAGGTCGCACAGCCAATACCCC
AGCCGCAGACGGAGCCCCAACTCCGAGCTCCTTCTCCGGACCCTGACTTGGTGCAGCGCA
CAGAGGCCCCACCTCAACCCCCACCTCTGAGTACACAGCCACCACAGGGCCCTCCTGAGG
CCCAGCTCCAGCCTGCCCCGCAGCCTCAGGTGCAGAGGCCACCCAGGCCACAGTCCCCCA
CCCAGCTGCTCCATCAGAACCTCCCACCTGTGCAGGCCCACCCCTCTGCTCAGAGCCTCT
CCCAGCCATTGTCAGCCTACAACAGCAGTAGCTTAAGCCTCAACAGTTTAAG
gtgagtggcctgctcttctttggcctgacttttgccctctccctggggatcaggtgggtg
ggagtcggggagggatccctagggagactgaggtttccttgttggaaacatcatcctttt
ctctgagactagagacagggaatggggctgttgggtgagactcgggtctcttgggaaagg

 3.03 Intr +  69109  69394  286  1  1  112   74   189 0.573  17.24
gttccccaaattgatagactgcctgtccctgaaagctgggagaccagctagagaacaggg
agacagggtgcgaccgggccttggtctcgtctgcttcattgattgcccccgtttatctca
gggcccagccacaccctgtcacccctgccactgtgtcaccagccccgtacccctccacag
GAAGGCAGTCCGATGTCCTTTTCTGAAGGAAAAGGCGTCATCGTCTCCCTCTTCTTCTCT
TCCAGAGCAAGACATCTTGCGACAGGAACTGAACACTCGTTTTTTGGCCTCTCAGAGTGC
TGACCGCGGGGCTTCCCTGGGCCCTCCGCCCTACCTGCGGACCGAGTTCCATCAGCACCA
GCACCAGCACCAGCACACCCACCAGCACACGCACCAGCACACCTTCACGCCGTTCCCCCA
CGCCATCCCACCCACCGCCATCATGCCGACGCCAGCACCTCCCATG
gtgcgtaccccaggcagaaatgtgaggataagtagagcacgactcttttctttatgcagc
acgtgggaccgggctgggcagcggggccaccagagatcgaatggggactgacggctgttg
gctggagagaagggaatgtgtcctagtgccctgcctcaggcagctctgacttcaggggcc

 3.04 Intr +  74616  74711   96  2  0   84  116    10 0.868   3.61
tttaagttacacattcgtggcacgtctgtgtgatcattccatcatggcttcttgactaat
ggcatcaaactgagattacgtggcttgctcatgtcgatgtctttctatgggacgggaatt
tgaatatgtcacttgcctcctactaaaatcttttttccccctctccgtctttggccacag
CTCTTCCATTCCTATCCTCCTGCAGTGTCGGGCATCCCCCCTATGATCCCACCCACTGGC
CCTTTTGGTTCACTACAAGGAGCATTTCAGCCGAAG
gtaagaaacctcacagtgaaaacacacaggcatgtgtctaagtggcgtcccgggccaggc
gtgcaggaagttctgcgtcctcttgcctgtgcagtgactcattaatcaggtcctaagtga
ccactgggattagagtgagcctatttttcttttttttccaagtccatctagttttaaatg

 3.05 Intr +  80170  80241   72  0  0  123   86    41 0.119   7.00
tgactcccttatgactgggcgctggagagctactgatggaaggcacttggagagtacaaa
gcactcttgtttcacgaaaaaagcctctgcagccaaaatctgctgaaagctttggggaaa
ttgaaggtggttttctctgaaatgtcttcctcctaaccacgttgctctttcttgttccag
AAACCAGGGAAGTGGTGTGCTATGCATGTTCACATCGCCTGGCAGATTTACCACCACCAA
CAGAAAGTCAAG
gtcagtccgaccttcgtggtgtagggaagaatgggatgcacatgtgagtgtgtgacgtgc
tcgggagaacctgatgaaggaggcatttaaaacacattttacagacccatagttaggaag
gatcaagcctctcttggaaaagctactcagaagtcttacttattttttcctagagtcagg

 3.06 Intr +  84681  84822  142  2  1   84  105    74 0.912   8.63
taccggcctgcagatctgacatttgagggtgaaatggtttttgtgtagctgctttctctc
acagtgtttgtaaacttgaacccaagtgcaccgttcacagtctccagctccagctcttca
ctaacacctttattccttgctgttggccttgggacccttactgttccccttgctgtgtag
AAACAGATGCAGTCAGACCCACATAAGCTGGACTTTGGACTGAAACCTGAGTTCCTGAGC
CGCCCTCCAGGCCCCAGTCTTTTTGGAGCCATCCACCACCCCCATGACCTGGCACGGCCT
TCAACTTTGTTCTCTGCCGCTG
gtgagtgtgggtttgggtggggggacagagctgagaaatgtagttctcaggtaactaaat
aaatgaggtttgggctctgagctgccgctcagtcaccacctacaaaaatacagttaatgc
cagcttgcaaggcaacatcgcagcacatccagggagttgggaatcttcattgatacactc

 3.07 Intr +  88002  88079   78  1  0   78   95    41 0.896   3.32
aaaaaaaaaaaaaccacattttcttttaccctgtgtcttgcctgcaggggcctgggtgga
cttcagccatgacctcccttgaacatattttctcacggggcccttaagcaagtagaagcc
agttgcatcttcgaagttggctttttgtaaactctggttttgttatgtttgacttaacag
GTGCTGCACACCCAACTGGGACCCCTTTTGGGCCACCTCCTCATCACAGCAACTTCCTCA
ACCCTGCTGCCCACCTAG
gtgagtcgcccaaaataatgggaactgagatgtgtgcttcaggcaaccctgctgtgttta
ccatgctcccgctgcacctccgggcaagctggtgggagtcccagataccctgcttaccac
ttaggcaggagatggtgctctcttaggagtttcagtacatcccgtccagcttccagattt

 3.08 Intr +  89015  89098   84  0  0  122   64   113 0.980  12.09
cccagtgcctaaatccaagtgtaatgaaaaccttttacaccatctggtaggaaaagtggg
acaggccaggtgggggcgtagagagggcagggatcccgcatcgccctgctcccaggaagc
tctgggttcctctcccagcagagcccctgaccatttccttcttccccatcttgtttgcag
AGCCTTTTAATCGGCCGTCTACATTCACAGGCCTAGCAGCAGTTGGTGGCAATGCCTTCG
GGGGACTTGGAAATCCTTCCGTTA
gtgagtacctctaacttttaaaaatctgccttggactttttatctcctgtgatccgcata
tggctcaagacctttctagagaaaaggaaactatgctctggggggaccagtgtaggttat
atcactgcaaaagcaggccttcacagtggggtgaggtggaagtgtgcagagccaccactg

 3.09 Intr +  90269  90491  223  0  1   97  102   212 0.999  20.69
tccagtgtaggacaagacttcctctaatgaatttgttaatctcctttccttttccagctc
ccaataatatgtattcattttaactctgaatgctgttaaaagttttttggtaagtacctt
cattacagcagattatataatttctcttaaacctttttgttctccacttcgccatttcag
CACCCAACTCAATGTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCAACCCTC
ACGAACCCTGGAACCGGCTGCACCGAACGCCTCCGTCGTTCCCGACCCCTCCGCCCTGGC
TGAAGCCAGGGGAGCTGGAGCGCAGCGCGTCCGCTGCAGCTCATGACAGAGATAGAGATG
TAGATAAACGAGACTCATCTGTTAGTAAAGATGACAAAGAAAG
gtacggaaagaaaccgctctcgagtccccacgggggagcctgctctatgccaagtaccag
tggaactggccgcccaccctccctgtcccagcctcgtgctttagccgccccggtagcctc
agctcctccccacagccagtgcccgcagcccctcgcagtccccatggcccgtagcatatg

 3.10 Term +  92808  94056 1249  0  1  115   46  1544 0.991 143.96
ggtaagtaggataagggtggctggctctgccctgtccagggcacggctgctgccttggcg
accatgggaagcagcccccagcctgtcctcttcacaccaccatttcacccgcagcccctg
tcccggccgactcgcccctttcatttcatctgcgtccttgtcttcccctctctcccccag
GGAAAGCGTCGAGAAGAGACACTCCAGCCACCCTTCACCAGCACCTGTCCTCCCGGTGAA
TGCCCTGGGACATACCCGCAGCTCCACTGAACAGATCCGGGCTCATCTGAACACTGAGGC
TCGGGAGAAGGACAAACCCAAAGAGAGGGAGAGAGACCACTCGGAATCCCGCAAGGACCT
GGCCGCCGACGAGCACAAGGCGAAAGAGGGCCACCTGCCCGAGAAGGACGGGCACGGCCA
CGAGGGGCGCGCCGCGGGCGAAGAGGCCAAGCAGCTGGCCCGGGTGCCGTCTCCCTACGT
GCGGACCCCGGTGGTGGAGAGTGCCAGGCCCAACAGCACCTCGAGCCGGGAGGCCGAGCC
GCGCAAGGGTGAGCCGGCCTACGAGAACCCCAAGAAGAGCTCCGAGGTCAAGGTGAAGGA
GGAGCGGAAGGAAGACCATGACCTGCCTCCAGAGGCCCCGCAGACCCACCGGGCCTCGGA
GCCGCCGCCTCCCAACTCCTCGTCCAGCGTGCACCCGGGGCCCCTGGCCTCGATGCCCAT
GACGGTGGGGGTGACGGGCATTCACCCCATGAACAGCATCAGCAGCCTGGACAGGACTCG
CATGATGACCCCCTTCATGGGCATCAGCCCCCTCCCGGGCGGAGAGCGCTTCCCGTACCC
TTCTTTCCACTGGGACCCCATCCGGGACCCCTTGAGGGATCCTTACCGAGAACTTGACAT
TCACCGGAGAGACCCGCTGGGCAGGGACTTCCTGCTAAGGAACGACCCGCTCCACCGGCT
CTCGACTCCCCGGCTGTACGAAGCCGACCGCTCCTTCAGGGACCGGGAGCCTCACGACTA
CAGCCACCACCACCACCACCACCACCACCCGCTGTCTGTGGACCCTCGGCGGGAGCACGA
GCGGGGAGGCCACCTGGACGAGCGGGAGCGCTTGCACATGCTCAGAGAAGACTACGAGCA
CACGCGGCTCCACTCCGTGCACCCCGCCTCCCTCGACGGACACCTCCCCCACCCCAGCCT
CATCACCCCGGGACTCCCCAGCATGCACTATCCCCGCATCAGCCCCACCGCGGGCAACCA
GAACGGACTCCTCAACAAGACCCCTCCGACAGCAGCGCTGAGCGCACCTCCCCCGCTCAT
CTCCACGCTGGGGGGCCGCCCGGTCTCTCCCAGAAGGACGACTCCTCTGTCCGCAGAGAT
AAGGGAGAGGCCCCCTTCCCACACGCTGAAGGATATCGAGGCCCGATAA
gccgagaacaggagcaagaacgaggaagaagaaaccctaggcagacaccaggccaggctt
gagagacagaactcctgcatggctcacacagactgggggggaaagccccaccccttcccc
ttgtaaaaaatgtatagactcagtgcacattttgaaatgttttgtatattatatgttgag

Predicted peptide sequence(s):


>AUTS2_1|GENSCAN_predicted_peptide_1|206_aa
ASDASSEKLFNTVIVNKETGSILALEECGFKLLSPPSQDLARNQDKSQIDDDKSRQLIDR
RALQVEGRQLYTSTFCISSRINLKTAYSEGFFGILKVKSDFPSPLSILPEVFCVSDNVEM
KEGFHLWISVIGQRPGSAGTCPYLESPGGLPCSIRELHIQPSFSVLTNLASNKAAEIILF
LKPEDFRNVRKPGLKCPPLSDVRIRG

>AUTS2_1|GENSCAN_predicted_peptide_2|69_aa
MFTRLGATPKNNIFTKASNRELLFEALFPVRLYADSLDHAEKGVPEPCPKYNCEHLQGPD
ASHTEEEAD

>AUTS2_1|GENSCAN_predicted_peptide_3|920_aa
MPSASLAVLSKFLRLVQEQGDPELGVGTLPEHDSQDAGPIVPKISGLERSQEKSQDCCKE
PIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPDPDLVQRTEAPPQPPPLSTQPPQGPPE
AQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLSAYNSSSLSLNSLRKA
VRCPFLKEKASSSPSSSLPEQDILRQELNTRFLASQSADRGASLGPPPYLRTEFHQHQHQ
HQHTHQHTHQHTFTPFPHAIPPTAIMPTPAPPMLFHSYPPAVSGIPPMIPPTGPFGSLQG
AFQPKKPGKWCAMHVHIAWQIYHHQQKVKKQMQSDPHKLDFGLKPEFLSRPPGPSLFGAI
HHPHDLARPSTLFSAAGAAHPTGTPFGPPPHHSNFLNPAAHLEPFNRPSTFTGLAAVGGN
AFGGLGNPSVTPNSMFGHKDGPSVQNFSNPHEPWNRLHRTPPSFPTPPPWLKPGELERSA
SAAAHDRDRDVDKRDSSVSKDDKERESVEKRHSSHPSPAPVLPVNALGHTRSSTEQIRAH
LNTEAREKDKPKERERDHSESRKDLAADEHKAKEGHLPEKDGHGHEGRAAGEEAKQLARV
PSPYVRTPVVESARPNSTSSREAEPRKGEPAYENPKKSSEVKVKEERKEDHDLPPEAPQT
HRASEPPPPNSSSSVHPGPLASMPMTVGVTGIHPMNSISSLDRTRMMTPFMGISPLPGGE
RFPYPSFHWDPIRDPLRDPYRELDIHRRDPLGRDFLLRNDPLHRLSTPRLYEADRSFRDR
EPHDYSHHHHHHHHPLSVDPRREHERGGHLDERERLHMLREDYEHTRLHSVHPASLDGHL
PHPSLITPGLPSMHYPRISPTAGNQNGLLNKTPPTAALSAPPPLISTLGGRPVSPRRTTP
LSAEIRERPPSHTLKDIEAR