-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (87967 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (20 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 14821 14943 0 Internal 123 92 Excellent tactaagttctccacagctaatggtaactcagcttggaaagagttctcttgtaggaggat gctgaagggaggttgccaagtggtgtgggaaactgcttcatgcttaagttcacttccata tcatgatactaaaaggtatctaacagctgattttcattgctttcatttgtgatctgctag GACCACTTGATCCTTATCACTGCTTTTGGCACACTCCTCATCCAAGAGTTGATCGCAGAG GCAGAGTTCCTTGCCACCAGTCCAGTGGAAGTACAAGCCAACTTTGCTCTCCAAATGGCA GCA gtagctgagcaggccgccctgcattctctcctcataaacatgctgttctcaagtttgtca gaatccagagctctctactcattacccccttttccaaacaagcaagcaaagcatgctctt cctttgtttcccttaattgcctaaaacatctccatgctcatagctgttgactctctttgc Exon 2 + 18977 19031 0 Internal 55 56 Marginal cagccaagctgtgggcccggcctgtagggtggaaggaactcttaagagaaaaaaaaaatc tctgctgtgattaatcaacagcttcagtctggtgaagtgaaaagagaaaagttggcccag atgtgcacatagggagagaaataagggagggaaattgcctttattcatgttctcccttag GCCAGTCGTTACCCCACGGATGAGATCACCTTCCTTTTACACCAGCCTGCAAGAG gtgtgtagtggtagtctcattttacagacaaggtgtaggatcagagaggttaactcgccc aagtcaaacagctaacaagtggtggaattggaatttgagccctgttcttctcagttcagt agccctgctgttcttgctgatgtcacctcagcatgggctctccaggtatgtgcaaatagt Exon 3 + 20032 20058 0 Internal 27 54 Marginal cactcactgaatgatgattgtttcattagtgtctttagaccctcagcacccagcaccata ggtggatgccagtcattattggttagaccaaacagaacttcaaggcagctgggcatggtg gctcacacctgtaataccagcactttgggaggccaaggtgggagggtcacctgaggtcag GCATTTGAGATCAACCTGGGCAACGTA gtgagacccagtgtctatttatttaaaaaaataaaataataataaaaaaagaaaaataac tttaatgttatttttgtcgtcctcttcatctgaacattggcctgcgtaggtattaacctg agtccagtgattgtttgtggagccccacagggtacttcccagtgacagcagcctggagtg Exon 4 + 22305 22349 0 Initial 45 43 Marginal ggggctggtgcctcagcctccagacgctctccagtaggtctgagtaggtggtgtggaccc accaggaaagggtggatccagtgaggcgggggccaggccttgcccaagagtcagaaagtg ggaagtcacgggggagatgaagggcgagtgagcagctagaaagtgccaggggacacaaaa ATGGGGGAGACAGGCAGCCTTTTGGGGCTGGAGGGCATGGACAGG gtgactgatgcctgagccacaggcagaatgtgagcagtttattttattttatattctaca tatttttatagcataaaattaagatatagttcacataaccaaattcaccactttaaagtg tgtactttgatggtttttgtatattaactgtgttttatatattatattaaattaatatat Exon 5 + 24373 24420 0 Initial 48 72 Good ccgcctcagcctcctgagtagctgggattacaggcatgtgccatcatgcccagctgattt ttgtatttttagtagagacagggtttcactttgttggccaggctggtcctgaactcctga tctcaaatgatttgctcatctcggcctcccaaagtgctaggattacaggcgtgagtcacc ATGCACGGCCTGGATGTGCCATTCTCTTATTCATTGATGAATGTGCAG gtgacttctagtcttttttggcaatgaataaccttgtcattttacacacagataaacaga ttgacaatgcttctgtgtgataggtgcagtaatggagatagacactggggaactagggaa ggcttccagaggatagttaagaaaggctcagggtgagtgagcgctggtatctgagtgggc Exon 6 + 30320 30442 0 Initial 123 45 Marginal tcattctctcagtttcccggagccttactgacagctttaaacctcattcctctgccatgc acaggtcgttcctcccgttcttttgagtgtttctccccactgattttcctgcctgtagtg agttggatggttgcccctccaaaagatatgtccaagtcctaacccctagaacctgtgaac ATGACCACCTTGTTTGGAAAAAAACTCATTGCAGAGATTCTTTCCTATGCTGCAGACGTA CATGAACCTGTGCTCATTGACCTCCTCTCTGGGCCTGGCCTTGTTGGTCTCTGGCTTGAA ATA gtgactgtacttctagtccacacagtgattacatatttattactctgtttgagctcccct agtccaaaggcaaagttcactgcctgccctttccactaactcctaggtcagacttgctag gttgtgtgcacagcagctacaagtgtggtttctaaggtgggtctgggtttgaatcctggt Exon 7 + 31225 31330 0 Internal 106 61 Marginal acaggtgtgagccaccacgtccagcccactctgagctttataaccagagagatgctgtgg ctagccaaatcgctcaacctatacttggaggatcccaagcttggatgagtgtaagagctg tgacttaaatccagcctacttgtatgtcattctgccacagttgtctttgtctctccacag TTTGTCCTGGAGCTGGGCATGGTGAGGGCTAAGACAATGGATTACAGAGCTACAGGTCTA GGAGGGCATGTGGAATTATGCCTATATGAGATAGATGACAAAGTGG gtaagagcatgtgctctggagttagacctgggttcagattcaggctctatgaccctatct cagtgaccttgggaaacttttctttgcatctctgggtctcagttttctcatctgtaaatt gggaataacaatggttcatacctgtcttagtctgtgctgctataacaaaattcctgagat Exon 8 + 32762 32884 0 Initial 123 55 Marginal caagattgggcactgggtaactgattacttgaattgaaccttgggattcagccagtgaaa gtggtccacctggcagtagtgaacctctggctcctgacctctgctgctggtgaatctgtt tctcctatggctgcacagacacagggtttcctgcctccaaagagcttttccactctgtac ATGGGACCTGAACCGGCTCCAGAAACCTTGGAGCCTGGCACCACTTTTCACATCACCCAG CAGGAGCAGAACTTAGATGGACCAGGCATAGATGGGAAACATGGGTTTATTGCTAAGGTC ATG gttagttctcggcggtggggcgggggggtttagtgggcaattgctttttggatttttgtt ttgttttagaagtaaaaaatatgggccaggcgcggtggctcatgcctgtaatcccagcac tttgggaggccgaggcgggcggatcacaaggtcaggagattgagaccatcctggctaaca Exon 9 + 45231 45341 0 Single 111 42 Marginal ccaacctgggtgacagagcgagaccccatcttaaaaacaaacaaacaaacaaatacttgg ttcatttggtacttggctttttggatcttggggaatattggagatgacggaataacttca aggagactaacttcaaggtcaagactcctgccaagactccaccagacataaaataggaaa ATGATGATAGAATCTACCTCACTGTTGGCCTGGCAGTGGGAGTTTGTTGATAACCCTGAA GATGAACTCCTCAAGGTGAAGAGCAAGGCTTCAGAATGGGCTGCTCTATAG atgtgagagacagagacagacctagccttgcaaaaaggttgctgtagtctttctcctacc atttccagcacaggatggtttctggtcccaggaggccctgtcttgtgctgtgtgggaccc ttagtgctgtgaagactagcagcaccctggaggtctttgttccttctgccctttccctta Exon 10 + 45708 45938 0 Terminal 231 59 Marginal atctcctaaccttggtttatatatttgtcaggaggtgggggaaacctgctttcccccacc tcctgacaaatatataaactggaaattgatccagtcctggatcagtttgggtcacacaac agggtcggcagtgttggcccacagagggccctgggccccttatttcccctttggccctag GCTCTGAGCTCTCAGGTTTTGGCTACCAAGCAAAAGGTGGAGTTGCATCAGTTGTTGCTC TTTACCAGGCCCCCAGGGGTTGCTGTCGGTGAGCTCACAGGATGTTTTCTTCTCTCTGCT TTGACTTGTGCTGAATTTCTGACTGACCCCATGCAGCATCTGCGTGGCTTCTGGGGCCCG AGCCCAGGTTTCAGCAAGCTGCCCATGGTTTACCCTCAGGATGAACTCTAG gaagctggggagcactgtggtggtggtataagttcagcccctcattttagtttattttta tgttaaaatgtttattaatacaaaataacacatagatcagaatgttgtatgacagaaagg gactgactggactcaggatctcccaccccagccccaggggtgaaggtgaaggtgattggt Exon 11 + 46096 46205 1 Internal 110 63 Marginal tttaccctcaggatgaactctaggaagctggggagcactgtggtggtggtataagttcag cccctcattttagtttatttttatgttaaaatgtttattaatacaaaataacacatagat cagaatgttgtatgacagaaagggactgactggactcaggatctcccaccccagccccag GGGTGAAGGTGAAGGTGATTGGTTTCCTGGGTATCGTTCCTTCCACGGTTTTTCCATGCA CGCTCTCATGTGCGTGTGTTTTTATCCTCATCCTGCTCTTCACCGTGGCA gtggggagcacactaaattgctctgacacctagttagttttttttttgattgagtgtatc ttgggaatctttccatatcagcatatacagatacactgcattcttttttttttttttttt ttttttgagatggagtcttgtgctgtctcccaggctagagtggaatggcacgatctctgc Exon 12 + 47486 47595 2 Internal 110 72 Good acaaaagaggggaaggtaggaatgagacaaaggaaaaggggaggcgggcatttcaggcag gagagcagcataggcagaaggtgcaaacatgtggcagagggtcggtgtccatggacacgc ttccaccacctggtctaatcattgacttatcagacatctaaatgcctgctgcgtgcccag CACTGTAGAGGGCCACAAGGCAGCAGGAACCTCTCAGTGCCTGCCCTCTGTGGGCTCTGA CTCCAACCAGGAGAAACTGGACGCACAACAGCAGGCAAAACTAGCTGATG gtgatagaggtcagaagagtggtttacagccaggcacagtgactcacacctgtaatccca gtactttgggaggctgaggtgggaggatagcttgagcctaggaggctgaggctgcagtga gctgtgatcaggccaccactgcattccagcttggcctggacaacagagcaagaccctgtc Exon 13 + 49522 49603 2 Internal 82 51 Marginal cagtggctcacacctgtaatcccagcactttgagaggccaaggcaggaggatggcttgag ctcaggagtttgagaccagcctgttaacagagaaagattttgtctctattaaaaataaaa aaaattagccagcatggtggcatgtgcctgtagtcccagttactcaggaggctgaggcag GAGGATCACTGGAGCCCAGGAGTTTGTGGCTGCAGTGAGCTATGATAGCACCACTCCGGG TGGTGACAGTCTTGGTGACAGA gtgagaccccatctaaaaaattaaaataataaaaataaaataaatgcatagtttattgtt attatggacaaatatattgtgatatatgattgtatatatttcattagcatgtaaaaatga tctctatctgatatagacatctgataatagaaaatgcggaagagagcattaacacaaaat Exon 14 + 56395 56490 0 Initial 96 54 Marginal ttatgccagttgctcctctgatacttgagggttatgtgaatctaacaacagacaaaaatc tctgcctcctggggcttatattctttgggaagagacaagcactaaacaaataaggaaata tatatacactctgccagatagccataagacggatggagaaagttgaagcagggaagggag ATGGAAGTACCTGAGGGTGGACTACGCATATTTGAAATAGGGAAGCCAGGGAAGACCTCA CTGAGATGGCCACATTTGAGAAAGGACCTGAAGAAG gtgaggcagtgagctgtggaggtgggtaactggggagggggaagaactttagctagagag aaaagccgctgcaaaggcccactgaaggcaggatatgcctgctgtgtcgagaccagcagg aggccgtgtgcctggtacttaatataccagaaggagtggagcaggcaggggtaccagttc Exon 15 + 69680 69809 0 Initial 130 69 Marginal cccaagcgtgccccactcgcaccatcctcttccttgtcactgcctcccctgacctcttcc tgtcttctcctctgcccaggctgatgggaaccaccctgtagaggtccatctgcgttcaga cccagacgatgccagagctatgactgggcctgcaggtgtggcgccgaggggagatcagcc ATGGAGCAGCCACAGGAGGAAGCCCCTGAGGTCCGGGAAGAGGAGGAGAAAGAGGAAGTG GCAGAGGCAGAAGGAGCCCCAGAGCTCAATGGGGGACCACAGCATGCACTTCCTTCCAGC AGCTACACAG gtgaggagaggactggcaggggacacggggcagaggaggcacagcccagtgcagtgggga tcctggccctctgcaaacgccatcatgtggggcgcagagtagcagagtgctgaaggactg gagccggaagcctgggttcacgcccagtgcggtggggatctgctctgccactcaccagca Exon 16 + 78676 78873 0 Internal 198 87 Good atgttaggctctgggagaaatgctgtggagactttttgcccatcctcccagagaagctgt cagtaccccctgttctaggtgaagaaactggtcctcagaaaggttgactccctgaggcca cacagctgttaagtggctgaggcgagggctgtggggctgttcccacgccctggcttccag GCCTGGCAGCATGTGGAGCTGCCCCTCCATCGTGTGTCCGCAGACCTCTCCCGGAGCTCC TCGCCACCCTCACTGCTGGACCAACTGCAGATGGGCTGTGACGGGGCCTCATGCGGCAGC CTCAACATGGAGTGCCGGGTGTGCGGGGACAAGGCATCGGGCTTCCACTACGGTGTTCAT GCATGTGAGGGGTGCAAG gtacggactggggggagcggtggctggccactgaggctgtggtcacatggtgaattgacc ctccacaaagctttccttgccttggggtggggccctgactgtacctattgcagaattcct gcccaggaggcagccaggcccttgtgctccagacctcagctctgggcactgcaggagaag Exon 17 + 80412 80550 0 Internal 139 100 Excellent taaaatagttttaattaaagttttagaattactttccttctccatctcccctccaaaaaa atttcttctcgttacttccaaatgtcaggagtgtttacaccttatacataatcgggccct ttggcacagcctccctcccacctcctggtggcctttcctcacctgttcttggtgcttcag GGCTTCTTCCGTCGTACGATCCGCATGAAGCTGGAGTACGAGAAGTGTGAGCGCAGCTGC AAGATTCAGAAGAAGAACCGCAACAAGTGCCAGTACTGCCGCTTCCAGAAGTGCCTGGCA CTGGGCATGTCACACAACG gtgagagctgaccagggcaactcacgggctgctggctccacacagcctgaaaccaaggtc cagggagcccttggggcagcctagagggggcacctgtagagcagtgcctggcgcacagta agcaccatggctgttggctgttggctttgctgatctggaccttggatcttagagcctaag Exon 18 + 82538 82740 1 Internal 203 88 Good catcttgtggagcttgcgatctggaggggccaccccatcattcctaccttgctgactcta gagcttctgggggccttaggctccaaaaggatttggcccatgcacctgtaaagggatggg gatgtcagaggtgctggggcctgcctgggctccttgctgactgcccccttccctgtgcag CTATCCGTTTTGGTCGGATGCCGGAGGCTGAGAAGAGGAAGCTGGTGGCAGGGCTGACTG CAAACGAGGGGAGCCAGTACAACCCACAGGTGGCCGACCTGAAGGCCTTCTCCAAGCACA TCTACAATGCCTACCTGAAAAACTTCAACATGACCAAAAAGAAGGCCCGCAGCATCCTCA CCGGCAAAGCCAGCCACACGGCG gtgagtgttgctgctgcttggcctggcagcatcctgggctctgggtcccactgccgcctg cctgactccgggagagccaggccttctccctccctcaacttcatggtgcaggcaagggac atggggagcacagggtgggggtctcccgaggcctgatctctaacggggcctggttttcag Exon 19 + 82921 83371 0 Internal 451 95 Excellent gtgagtgttgctgctgcttggcctggcagcatcctgggctctgggtcccactgccgcctg cctgactccgggagagccaggccttctccctccctcaacttcatggtgcaggcaagggac atggggagcacagggtgggggtctcccgaggcctgatctctaacggggcctggttttcag CCCTTTGTGATCCACGACATCGAGACATTGTGGCAGGCAGAGAAGGGGCTGGTGTGGAAG CAGTTGGTGAATGGCCTGCCTCCCTACAAGGAGATCAGCGTGCACGTCTTCTACCGCTGC CAGTGCACCACAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCATCCCCAGC TTCAGCAGCCTCTTCCTCAACGACCAGGTTACCCTTCTCAAGTATGGCGTGCACGAGGCC ATCTTCGCCATGCTGGCCTCTATCGTCAACAAGGACGGGCTGCTGGTAGCCAACGGCAGT GGCTTTGTCACCCGTGAGTTCCTGCGCAGCCTCCGCAAACCCTTCAGTGATATCATTGAG CCTAAGTTTGAATTTGCTGTCAAGTTCAACGCCCTGGAACTTGATGACAGTGACCTGGCC CTATTCATTGCGGCCATCATTCTGTGTGGAG gtgagtgagagtggggcaggtgggctggcctggcacacccagtcgtcctgggggttggcc ctcactgcagggcactgtgcctgagctctgacagtgtggggaagtgtccctgtgatcttg gcagtggaacatgcaaggcactgactgagcatgcaggatcagctccatctcattatgtac Exon 20 + 84424 84671 1 Terminal 248 93 Excellent tggattaagaccaggggtagggagattagaacacccagtggagcattgctgatgggacag ggcttggtctgtcacggccaaggaggcctgccgtcccctgggccaagtcacctcttgggg tggaagtaggggagctccactgcctttctgagctccctggcgtgccctgtgtccccacag ACCGGCCAGGCCTCATGAACGTTCCACGGGTGGAGGCTATCCAGGACACCATCCTGCGTG CCCTCGAATTCCACCTGCAGGCCAACCACCCTGATGCCCAGTACCTCTTCCCCAAGCTGC TGCAGAAGATGGCTGACCTGCGGCAACTGGTCACCGAGCACGCCCAGATGATGCAGCGGA TCAAGAAGACCGAAACCGAGACCTCGCTGCACCCTCTGCTCCAGGAGATCTACAAGGACA TGTACTAA cggcggcacccaggcctccctgcagactccaatggggccagcactggaggggcccaccca catgacttttccattgaccagcccttgagcacccggcctggagcagcagagtcccacgat cgccctcagacacatgacacccacggcctctggctccctgtgccctctctcccgcttcct --------------------------------------------------------------------------------