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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (93736 bp)
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PERCEVAL Exon Candidates (13 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1282       1580   0    Initial    299    85        Good
aaaaatggtctccgtcggagtcaacgccctttcctgtgcggaccaatcagaatctcaaac
acagggcacggggcccacacttccgtccggtctgcctggtctctctaaccgcgccagtgt
gcctccgactcggaacggcttccgcggccggggcagcgagggccgggggcggcgggcggg
ATGAGTGCGGTGTGCGGTGGAGCGGCGCGGATGCTGCGGACGCCGGGACGCCACGGCTAC
GCCGCCGAGTTCTCCCCGTACCTGCCGGGCCGCCTGGCCTGCGCCACCGCGCAGCACTAC
GGCATCGCGGGTGAGGCGGCGCCGCGCAGCTGGGGCCGGGGGGCGGAGGCGGAGGCGGGG
GCCAGCCGGGCTCCAGTTCCTCGCGCTCGAGGGAAAGCCCCTCTGAGCGTAGACGGTTCC
GCGGGTCCACGCCAGGGGGCAGAAGAGGCGCTGGTCGGCGCTTCTCCTTTCTTTGCCGA
gtgcgaggagttggtctgaagcaggagtcgatcttccagttgtgtgcaagtgcatatacg
tgtagcctagtagcccgtgtccttgttccttgagaccgcgctgcctccgccacgtgtcac
acgcccaggcacacgtccccgtagggagagccgggggagcctgcgcggtcccttggatcg

Exon  2 +       4935       5085   2   Internal    151   100   Excellent
tgccatatttgtcaagtacctactctacttaactcccgtagttgtgcagattacatgaga
tatacgtgttaaaatgtgtgataaattgaaagaaaaaaaaccataattgttatttttttt
gttgtgtagctgcctatgtaagtgttgtatttttttgttgtttgttttttcctagtgtag
CTTTGACTGGAATGATGGTTTGTTTGATGTGACTTGGAGTGAGAACAACGAACATGTCCT
CATCACCTGTAGTGGCGATGGCTCGCTGCAGCTCTGGGACACTGCCAAAGCTGCAGGGCC
ACTGCAAGTCTATAAAGAACACGCTCAGGAG
gtaggagggaaatctttctgggctgattatttttctttcttcgactttggttgaaatcca
tttggggatggacacatggagaaatatcttcaggggacaagtttaaacgttagcatttct
tatacatactagatgtcacttattatttgattattcaaacataaagtacctcttggccta

Exon  3 +      16228      16537   2   Terminal    310    54    Marginal
gatcttaaagttaaatggggaatagttatataaacttgtgatttatttttctctgtctaa
aaaaagtacatatttctttgttttttgcacagtaaagatttagaagcagtgacaactgag
tagcagtgaatattcttagtgccctgagtatggcctctaaatactgtttgccactaacag
GAATAGTGTCTTTGGAGAAGTCATTTATTCCAGAGCTGAGCAGGAATGCAAGATATCTTC
TTGTGTCAGAAAGCAGGAAAGCTATGAAAGGCCGCTGGAGACATATCAAAGGTTTAGAAG
GTACAACTTGAAGGGACTCTCACTGGCCGAAGATGAGACTATTGGAACAACCAAAAGAAT
GAAAGCAATGAATTTAAACGCCACACACACACACACACACACACACACACACACGTACAT
GTATTTTCAGTCCTTACGTGGAGATGGAGTTGTGATTAGGAAAAATGTAGTCACCATTGA
AGATTATTAG
gacatccagctcattattctgaaaattgataaacaaaagtaaagaatcagtgcatttact
ttccctttcttgtatgagttttattgtggtattataaaatagttgataagaaaagttctt
gctaatagagttctagctaataaatgcagaaggaataacagaattagaaaatcactattt

Exon  4 +      21013      21098   0   Internal     86    68    Marginal
actcctggcctcaagtgacctgcccgccttggcctcccaaagtgctgggattacaggcgt
gagccaccacactcagcctatttccttctttatgatcccatttttaacttcaccaccatg
tgtgtcctatctttagctctgtcatagagacctaatgcttgctacttggttgtgcaacag
AAGACAGCTGACAGCAACAATGCCATCAGCATGGTTTTCTTACCTTCTATCTTTGATGTT
GATTCAGGCTGGATTCTCTTGAGCCG
gtggaggctcctgcagttttagaaggtgagtagtcataaggtgtcacctgctgcatcaca
ctggaaatgtgtggaggcagtggagtctgagctgatgatgagtatttacttagtagttct
ctgtacctacctagcagtgattcaggttgtaaagaaaaatttaattggttaaattatttt

Exon  5 +      23387      23530   1   Internal    144    55    Marginal
atctctagaaattattcatcttataactaaaagtttgtatcctttgaccaacatatcccc
atttcccccacccccagcccctggcaaacactactctactgtatgtttctctaagtttga
cttttttagattccacctataagtgacgggatcagtattactgatgttttttttcctcag
CCTCCAACATGGCTCAATATAGTACTGGGCAGCAGAGAGAAAGTAACCCACATGTAAGCG
GCTTAAGCCCAGATACTCATACTTCCTACGTATATGTGGGAGAGAGTAGTAAGATTCAAA
GTAACCTGCTGGCTGATCACCAAT
gtgatataccaatggcatatactcaggtccttgtcaggactaatttcataaagtataatt
atgcacatattttgttgaacttagtttacagcagtgatctgtgtataatctgttgtataa
aatgaaagaatgaaaacatttccaaaagttttcaagtagttcatttgaaatggttcactg

Exon  6 +      27307      27414   2   Internal    108    58    Marginal
tgagatacatcccatcaatacctagtttattgagagtttttagcacgaagggctgttcaa
tttggtcaaaggccttttctgcatctgttgagataatcatgtggtttttgtctttggttc
tgtttatatgatggattacatttattgatttgtgtatgttgaaccagccttgcatcccag
GGATGAAGCCAACTTGATCTTGGTGGATAAGCTTTTTGATGTGCTGCTAGATTCAGTTTG
CCAGTATTTTACTGAGGATTTTTGCATTGATGTTCATCAGGGATATTG
gtctaaaattctcttttttttgttgtgtctctaccaggctttggtatcagtatgctgctg
gcctcataaaatgagttaaggaggattccgtcttgttctattgattggaatagtttcaga
aggaatggtaccagctcctctttatacctctggtagaattcggctgtgaatctgtctggt

Exon  7 +      30818      31829   2   Terminal   1012    70        Good
aattttggcttttgttgccattgcttttggtgttttgggcatgaagtccttgcccacgcc
tgtgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaac
gtttaaatctttaatccatcttgaattgatttttgtataaggtgtaaggaagggatccag
TTTCAGCTTTCTGGAAGCACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATG
CCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCA
GGAGAAGGAAATAAAGCGTATTCAATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGC
AGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCT
GATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATT
CTTATACACCAACAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCCATTCACAAT
TGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTT
CAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAA
CATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGT
AATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGA
AAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATCGCCAAGTCAATCCT
AAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGC
TACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAG
AACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGA
GAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCT
AGCCATATGTAGAAAACTGATGGTTTTTATAAATAGTTTCATTGGGATGCAGCTACGCCC
GTTTATTAACATATTGTTTATGGTTGCTTTCACACTACAGTGGTGGAGTTGA
gtagttgtgagagagactgaaaggtcctcaaagccaaaaatatttaccgcctgtggccct
tgacagaaaacgtttgctgacctctggcataaatcctcaaggagagagtaagaagtggaa
actcttttgtgcagttggctgtttagtagagaacagaagacattagctagaggaggaggt

Exon  8 +      35142      35231   0   Terminal     90    70        Good
gataacttatttgctcacataagtgaaaagttcagaattaaatctggctttataggcatg
gttgaatgtagggctctgtcttctgttgtgctggtttcagaatcagggtatcaggcacca
catgatggcaagatagtagtagctccaacacctacctcttttctggtttctgtccagtag
GAGAAAGTGAAAGATTCCTTCTCAGACATCCAGACTGTTTCATTTTCTGTCATGGGCTCT
GATGCGTCCTTGTGGATGTTCCTGAACTAA
tcactgtgtgtgggtgagggggatacaatattttgattggcttaggcttggttagtccct
gcagttgggaatggaaaatgagagagggtgttacccaaacaacatggattgaggatggaa
agagtgaatccagattaggtgaatgtaggtggatggagtcgaaggggccagtattcacta

Exon  9 +      42552      42684   0    Initial    133    48    Marginal
aaattagcaggggcatggtggtgtgcgcttgtagtcgcagctacttgggaggctgagatg
ggaggattgcttgagtctgggaggtggaggttgcagtgagctgagatcgcatcactgcac
tccagcctggaaattaaaagaattaaaataattcctccagaattagccaacattgattgt
ATGGCATTTGTCGTCCAGCAACACAAGGAGGCAGCAGCGCAGTGTAGTTGTAAAGCTGTA
AAGTGTGCATGCTGGGGACCCAGACTCCTTGGGTTCTGGTTCCAGGTCCTGGTTCTGTTG
CTTACTATCCTGG
gtgagttatttcatctttatatgctgcatttgtatagtactatattcctcatttgtatag
tactatacaattacttttatatctccaaattcctactttatgtagttgtgatgtttttag
aaaaaatatgtataaaatgcttagaacagtatgtggcacattggaagcactcaaatatta

Exon 10 +      59792      59899   0   Internal    108    71        Good
taacgaatggcaacacaacagaaaggaagaaactggaactgtggagctagatcactggct
ggaggttaaggctgtgcatgtagatttggacaccatttactcactgataattcagtccat
aagaatgaataagccaaagggagataagtgtagagaaagaacaaaaattccctccttcag
GAGGGAGTTCATGTTGGAAAGCAGGAAGGAGCAGCCCACCAGGAACAGGAGGAAACCTTA
GAGCATGCAATAGTCACAGAAGCTGTGGGAGGAGGGGCTTTCAACAAG
gtgtgaatggccagtaatgtcagatccaccagataggttaagcagtatgaagagagaact
tggaatcttctctttttgtcgctcatggattcaaaaagatatccacatataggatctagt
tcttggaattcgaacacctttctggcatttgaagcaagaaggcataaactgagatgagac

Exon 11 +      71830      71946   1   Internal    117    66    Marginal
gaacctggctgttgaggtgtatgggacccctcttcactatcttcacaagttatctgtaaa
tttagaacttttctaaatgaaaaatgtttattaaaatgttttaaaataaggcaaactgac
cacacaaatttaagttgctgcttaaaatccttcagtggctttttttttctttttttaaag
AGAAAATCCCAAATTCTTCAAATGACCTACAAGACCTGTTTGACCTGGCCCTGCTTACGT
CCTGGAACATTCTTCCCTTTCCCTGCGCCAGCCTCATGGGCCCTCTGGTCACACACT
gtcaggctccttgcagacaagcaataagctgctcttctgctgtctccctggctaactcct
caaccttcagatctgcagctcagatgtcacttcctcaggacgtcctcttaagtcatcctg
cattgtcttttggggcacttgtcaattgtcattacgtttgtgttttggtgatttttaaaa

Exon 12 +      79039      79500   0   Terminal    462    66    Marginal
attaagatggtgatctcaaccagtattttaaacacaaacatttgagttgtgtatattatt
aatttatatatttttcaaaggataatttgtattattttaattatttttatgtacagaaaa
ctcaaccgtgtacatttaatccagtttagtggcaggttctttagcctttgccttttccag
CTTGGCAGTGTGAGCCACAGACTTGGGACCAAGGACATTGCCCCCCCAGTGACAGCAGAT
CTCATCGTGTCTGTCATTGTAATTGGTCCTGATAGCTTCCACCATCTTAGCCAAAGCCCT
TTTGTCTTCCGAGTTAATCTGTGTGAAGGTGATGGTGGTGTGGGTCATCCTGTGAACCAG
TCTTGCCTTTCCCTTGACAGCGCAGTCAGGGACCCCCATTTTATGAGACAGGGCAGGCAG
GAAGACAACCAGCTTGATGGGATCCACGTCATGTGCAGTCACCGCCAGCTGAGCCTTCTT
CTTCTCCACCAAGGTGGTGACGGTGTTAACCCCAGCTTGAAGGACAGGTGGTCTCTTAGT
GGGGACATCCCCTTTGCCAACAGCTTTCTTCTCAGCCTGGGCCAAGTCTCTGCCTCTTCT
CTTGCTTTGTCTCTGGTCTGTATTATGGGCCAGCTTATGTAG
ttgagtagctgtttggtggtcccagggcctgggtgaactggttcatcacaggaggcactt
ttaggctcttgtagaggataactctttgctgctgcagcctgacatagtggggccatttca
caaagtgggtgaggtcccttttgggctggatgtcctgtccagtgccagaattcttaggcc

Exon 13 +      89672      89776   2   Internal    105    78        Good
taacagaatcagataacgaacttcattacttagcttgaacaactatcaacattcttattt
tatttattcctgtactctcacacatcgtttagttatcgctaacattatttttactatttt
taggtataattcacatatattgaaatttacaaatcttagatatacatttttgacaaatag
ATACGTCTGTGAAATTCACATCATCCCAGTTATTGGAAACTGGGAAAGCCCCCAGTTTCC
TTTTTACCCCTTTCCAATCTCCCCTATCCCCACCCTTCCCTCCAG
gtgagaagagtaacattgttctgactttttgtttgtttgtttgtttaccttagatgagtt
ttgcctgtcttagaattctataaggaactcttctgtatgtcctcacttgtttctggcctc
ttacctgtgagcttcacccgtggtactgagcctgttagcaattcctccctttgttttgct

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