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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (14460 bp)
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PERCEVAL Exon Candidates (5 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       2905       3174   0   Terminal    270    51    Marginal
tctctgataagaaacagtgtcattgggaccacctcagagatgtaaatgtaactcctttaa
tttactcctggaattatgagagcttatattcctttcaaaacaagcccattttttaattga
tgtaagttaattattgatgtaaagtaattatactagtcctcaactcactctgatttttag
GTTGTCAAATCAGAGAAAGTCACAGTTTTATCAATTTTTTCTTCCAAGCAAGCCCCTGAA
AAGTTGCTAACAGGAGGAACTCAGGAATTAGATGTTCCCCTCTCGTCCTCTCCTTCCAAC
ATTTATTTGGCTAATATATATTTAATAGGAAAATACAAAACAACTTCTCAGACAGGAGCT
GAGAGCCAGGTTATGAGGTGGAGTGGAAAAGCTCTGGACCTGCAATCAGAAGTTAAGGCT
GACCCAACACTCACCAAGTGTGCAGCATGA
gacaggtgctttagctctctgaaactcagtgtgcccatctttaatttggataataggagc
catttcccagggttgttgcggaaggtaaacacactccctagatattgactatgaatgagg
agcatgtgtgtgtgacccatggcaaatccttgagctctctggttctcattttctgttgac

Exon  2 +       5777       5863   0    Initial     87    98   Excellent
agccaagaaaacattccaggaactcctccaacacagtcatgaagaaggaaggttcttctt
cagtattgttggtggttttcaactacatatcctaaagtacatttttgattctatcgtttc
aattattcattcattcattcattcattcaggcttagagaaacctccaggagactgctatc
ATGGCAGAGAAGCCCAAGCTCCACTACTTCAATGCACGGGGCAGAATGGAGTCCACCCGG
TGGCTCCTGGCTGCAGCTGGAGTAGAG
gtaggttctgagttaggtcatcttaagttggatttaaaattgtgttatcacatacttttc
ccacagaaactatgagatgttgcttactgaagcattgtgccttaaataaaaatggactgt
aattaagaaaaagatgaacagatttgacctattaattcttaaaatttcttctcatctaaa

Exon  3 +       8730       8862   1   Internal    133   100   Excellent
acacatatatatatatatatatatatatatatatatatagtttttgtttcaagtgaaatc
ttaccaggcagtaatttctttgccattttacaaatttagtcatttccacaaccatttgtt
catcccaaaagggtgggtttcatagacacttcactctccttttttttcttccttctaaag
ATGGATATTTGATGTTCCAGCAAGTGCCAATGGTTGAGATTGATGGGATGAAGCTGGTGC
AGACCAGAGCCATTCTCAACTACATTGCCAGCAAATACAACCTCTATGGGAAAGACATAA
AGGAGAGAGCCCT
gtacggtatattttctgttcttccatccacagagaacacagagtgatttaggtccttcct
tgagtgggtgggacgatggcagggcatcatgaccagcagcaggctgggccttgggcatgt
acgctgaggtccagtattgcagagtcccatggagatgagggaacagtgaacatggggagg

Exon  4 +      10778      10919   2   Internal    142   100   Excellent
gttaagagataaatgttaatatacctgtaaaactcagagcataatgactagactataaaa
ggcacccactggaggtgaattattttgccatcacctgatactctactcccttaggttttt
ataaacctataaaatctaaggcaaaaggtatttgaccatttggttgtttctgtctttcag
GATTGATATGTATATAGAAGGTATAGCAGATTTGGGTGAAATGATCCTCCTTCTGCCCGT
ATGTCCACCTGAGGAAAAAGATGCCAAGCTTGCCTTGATCAAAGAGAAAATAAAAAATCG
CTACTTCCCTGCCTTTGAAAAA
gtaagtgaagcagttcagtgttttggggaactgagtttagaggccaatagaaaaatagtg
gctgggcattcctgggtcactgatcttcactttcagtgagacttcctgaacaccaatgca
gcactctgactctcaaggcattttatgaaaatagacttggagaaacaattgtatcattta

Exon  5 +      12057      12188   0   Internal    132    94   Excellent
gtagagttacagttcttactctctcattcattcagataatgtggagaaagctctggattt
ctgcacccatgcagtaaggcaacagaggtggggaaagtcagggtggagaggctccgaaag
aagcaggggtcctagcctgggtgtgcatgtgttcctgatctgattcctcccattctccag
GTCTTAAAGAGCCATGGACAAGACTACCTTGTTGGCAACAAGCTGAGCCGGGCTGACATT
CATCTGGTGGAACTTCTCTACTACGTCGAGGAGCTTGACTCCAGTCTTATCTCCAGCTTC
CCTCTGCTGAAG
gtgacccatttcacagcccagagaggcagccccacatctcccatcttgggatcttgtatc
tgggccctgcgactgaccaagttttgccccagtcttctccaggccttcagtgccccaagg
tctccaaaatgagcttccaggctccaattttgaggaatgaaaacacttttgttatggaaa

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