GENSCAN 1.0 Date run: 16-Jan-104 Time: 15:44:07 Sequence PPARD_1 : 87967 bp : 49.63% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Term + 15291 15357 67 0 1 111 54 69 0.096 3.21 tgactctctttgcctcctagttcctgttcctctggtgtaggatttctcagccctagcact gtaaacatgttgggctggataatcatctcttgtatgggctgtttgtgcattgtaggatgt tgagcagcatccctggcttctacacactaagtgccagtgacactcttctcccctccccag CTGTAAAACCCAAATGTCTGCGGACATTGCCAAATGTCTCCTAGGGGGCAAAATCACCCC TGGTTGA gagtcactgctctatcatttattcactaaatactgctggtcagctgggtccactggcgaa cctcacatcaataaacctggtaatagaagcatattgttcttacattagaagtttactctc ttcagttatctcactgggcccttgagggctttggggaggagtgatgggaaatggtttaca 2.06 PlyA - 17396 17391 6 1.05 2.05 Term - 18775 18614 162 1 0 75 48 84 0.241 1.04 2.04 Intr - 25751 25594 158 0 2 102 41 82 0.508 4.63 2.03 Intr - 45942 45773 170 2 2 34 63 132 0.099 4.89 2.02 Intr - 53676 53618 59 0 2 89 86 58 0.162 3.38 2.01 Init - 60369 60283 87 0 0 83 80 47 0.203 4.04 2.00 Prom - 60727 60688 40 -7.16 3.01 Init + 69680 69809 130 1 1 96 94 134 0.805 15.11 cccaagcgtgccccactcgcaccatcctcttccttgtcactgcctcccctgacctcttcc tgtcttctcctctgcccaggctgatgggaaccaccctgtagaggtccatctgcgttcaga cccagacgatgccagagctatgactgggcctgcaggtgtggcgccgaggggagatcagcc ATGGAGCAGCCACAGGAGGAAGCCCCTGAGGTCCGGGAAGAGGAGGAGAAAGAGGAAGTG GCAGAGGCAGAAGGAGCCCCAGAGCTCAATGGGGGACCACAGCATGCACTTCCTTCCAGC AGCTACACAG gtgaggagaggactggcaggggacacggggcagaggaggcacagcccagtgcagtgggga tcctggccctctgcaaacgccatcatgtggggcgcagagtagcagagtgctgaaggactg gagccggaagcctgggttcacgcccagtgcggtggggatctgctctgccactcaccagca 3.02 Intr + 78719 78873 155 0 2 96 102 126 0.187 14.59 cctcccagagaagctgtcagtaccccctgttctaggtgaagaaactggtcctcagaaagg ttgactccctgaggccacacagctgttaagtggctgaggcgagggctgtggggctgttcc cacgccctggcttccaggcctggcagcatgtggagctgcccctccatcgtgtgtccgcag ACCTCTCCCGGAGCTCCTCGCCACCCTCACTGCTGGACCAACTGCAGATGGGCTGTGACG GGGCCTCATGCGGCAGCCTCAACATGGAGTGCCGGGTGTGCGGGGACAAGGCATCGGGCT TCCACTACGGTGTTCATGCATGTGAGGGGTGCAAG gtacggactggggggagcggtggctggccactgaggctgtggtcacatggtgaattgacc ctccacaaagctttccttgccttggggtggggccctgactgtacctattgcagaattcct gcccaggaggcagccaggcccttgtgctccagacctcagctctgggcactgcaggagaag 3.03 Intr + 80412 80550 139 2 1 89 93 317 0.993 32.34 taaaatagttttaattaaagttttagaattactttccttctccatctcccctccaaaaaa atttcttctcgttacttccaaatgtcaggagtgtttacaccttatacataatcgggccct ttggcacagcctccctcccacctcctggtggcctttcctcacctgttcttggtgcttcag GGCTTCTTCCGTCGTACGATCCGCATGAAGCTGGAGTACGAGAAGTGTGAGCGCAGCTGC AAGATTCAGAAGAAGAACCGCAACAAGTGCCAGTACTGCCGCTTCCAGAAGTGCCTGGCA CTGGGCATGTCACACAACG gtgagagctgaccagggcaactcacgggctgctggctccacacagcctgaaaccaaggtc cagggagcccttggggcagcctagagggggcacctgtagagcagtgcctggcgcacagta agcaccatggctgttggctgttggctttgctgatctggaccttggatcttagagcctaag 3.04 Intr + 82538 82740 203 0 2 109 101 441 0.999 46.50 catcttgtggagcttgcgatctggaggggccaccccatcattcctaccttgctgactcta gagcttctgggggccttaggctccaaaaggatttggcccatgcacctgtaaagggatggg gatgtcagaggtgctggggcctgcctgggctccttgctgactgcccccttccctgtgcag CTATCCGTTTTGGTCGGATGCCGGAGGCTGAGAAGAGGAAGCTGGTGGCAGGGCTGACTG CAAACGAGGGGAGCCAGTACAACCCACAGGTGGCCGACCTGAAGGCCTTCTCCAAGCACA TCTACAATGCCTACCTGAAAAACTTCAACATGACCAAAAAGAAGGCCCGCAGCATCCTCA CCGGCAAAGCCAGCCACACGGCG gtgagtgttgctgctgcttggcctggcagcatcctgggctctgggtcccactgccgcctg cctgactccgggagagccaggccttctccctccctcaacttcatggtgcaggcaagggac atggggagcacagggtgggggtctcccgaggcctgatctctaacggggcctggttttcag 3.05 Intr + 82921 83371 451 0 1 45 105 911 0.995 81.37 gtgagtgttgctgctgcttggcctggcagcatcctgggctctgggtcccactgccgcctg cctgactccgggagagccaggccttctccctccctcaacttcatggtgcaggcaagggac atggggagcacagggtgggggtctcccgaggcctgatctctaacggggcctggttttcag CCCTTTGTGATCCACGACATCGAGACATTGTGGCAGGCAGAGAAGGGGCTGGTGTGGAAG CAGTTGGTGAATGGCCTGCCTCCCTACAAGGAGATCAGCGTGCACGTCTTCTACCGCTGC CAGTGCACCACAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCATCCCCAGC TTCAGCAGCCTCTTCCTCAACGACCAGGTTACCCTTCTCAAGTATGGCGTGCACGAGGCC ATCTTCGCCATGCTGGCCTCTATCGTCAACAAGGACGGGCTGCTGGTAGCCAACGGCAGT GGCTTTGTCACCCGTGAGTTCCTGCGCAGCCTCCGCAAACCCTTCAGTGATATCATTGAG CCTAAGTTTGAATTTGCTGTCAAGTTCAACGCCCTGGAACTTGATGACAGTGACCTGGCC CTATTCATTGCGGCCATCATTCTGTGTGGAG gtgagtgagagtggggcaggtgggctggcctggcacacccagtcgtcctgggggttggcc ctcactgcagggcactgtgcctgagctctgacagtgtggggaagtgtccctgtgatcttg gcagtggaacatgcaaggcactgactgagcatgcaggatcagctccatctcattatgtac 3.06 Term + 84424 84671 248 2 2 110 43 424 0.999 36.05 tggattaagaccaggggtagggagattagaacacccagtggagcattgctgatgggacag ggcttggtctgtcacggccaaggaggcctgccgtcccctgggccaagtcacctcttgggg tggaagtaggggagctccactgcctttctgagctccctggcgtgccctgtgtccccacag ACCGGCCAGGCCTCATGAACGTTCCACGGGTGGAGGCTATCCAGGACACCATCCTGCGTG CCCTCGAATTCCACCTGCAGGCCAACCACCCTGATGCCCAGTACCTCTTCCCCAAGCTGC TGCAGAAGATGGCTGACCTGCGGCAACTGGTCACCGAGCACGCCCAGATGATGCAGCGGA TCAAGAAGACCGAAACCGAGACCTCGCTGCACCCTCTGCTCCAGGAGATCTACAAGGACA TGTACTAA cggcggcacccaggcctccctgcagactccaatggggccagcactggaggggcccaccca catgacttttccattgaccagcccttgagcacccggcctggagcagcagagtcccacgat cgccctcagacacatgacacccacggcctctggctccctgtgccctctctcccgcttcct Predicted peptide sequence(s): >PPARD_1|GENSCAN_predicted_peptide_1|22_aa XCKTQMSADIAKCLLGGKITPG >PPARD_1|GENSCAN_predicted_peptide_2|211_aa MCQATLASNDQGYEGQMPSKVWHSEHMSQVRRQQVGYSGESISAELYDSFLEFILRVNHG QLAETWARAPEATQMLHGVSQKFSTSQSREKKTSCELTDSNPWGPVLSLPQPSRFKESTS YTPPFPFSIQGTDKTSPPQSPPPFHFQCHQGTVIKARQGLLTVLEQIQGASMHDYSQGLL CPLTWNETLQEAPRPAKILPLLSDQQETAIF >PPARD_1|GENSCAN_predicted_peptide_3|441_aa MEQPQEEAPEVREEEEKEEVAEAEGAPELNGGPQHALPSSSYTDLSRSSSPPSLLDQLQM GCDGASCGSLNMECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCERSCKIQKK NRNKCQYCRFQKCLALGMSHNAIRFGRMPEAEKRKLVAGLTANEGSQYNPQVADLKAFSK HIYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKE ISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK DGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGD RPGLMNVPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRI KKTETETSLHPLLQEIYKDMY