-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (11415 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (13 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1243 1339 0 Initial 97 67 Marginal ggggcggccggcgcgctccctggcccggtccccgcccggccccgggccccccgcccctcc ccgacccggggccggggcccctgccgccgccgccgccgccttccgacccctgcgccccgg ccccggtcccccgggccatgcagcctcggccccgcgggcgcccgccgcgcacccgaggag ATGAGGCTCCGCAATGGCACCTTCCTGACGCTGCTGCTCTTCTGCCTGTGCGCCTTCCTC TCGCTGTCCTGGTACGCGGCACTCAGCGGCCAGAAAG gtgagcgcgacccccgcccggcccgcacctggcgcacctgggcgtcggcggcgggagcgg gcccggcggtggccgcggaaggcggccggaagccgacgcaggcgccccttccccgcccgg gcggcgcgaggacgcccctcccaccctcccccacttgtttgctgctggagccgcggcgtt Exon 2 + 5857 6042 1 Internal 186 100 Excellent agcattagtgtcagtgtaattttagagtgaccccagctatgtcacgtgtggcaggcacaa gaacagatgtcaatgagctattgcagaggtggacacccagatgtgtgcgctggcacactg gaggggcccgtagggtggctctagaccgccccctcgtgacggcttgcctaccacctgcag GCGACGTTGTGGACGTTTACCAGCGGGAGTTCCTGGCGCTGCGCGATCGGTTGCACGCAG CTGAGCAGGAGAGCCTCAAGCGCTCCAAGGAGCTCAACCTGGTGCTGGACGAGATCAAGA GGGCCGTGTCAGAAAGGCAGGCGCTGCGAGACGGAGACGGCAATCGCACCTGGGGCCGCC TAACAG gtgaggtctggggcgggagggggaaaaggcgggggcgggctggttgtaggttccctggtc tcagtcccgatccttcccgacccacccagaggacccccgattgaagccgtggaacggctc acaccggcacgtgctgcacctgcccaccgtcttccatcacctgccacacctgctggccaa Exon 3 + 6132 6272 1 Internal 141 99 Excellent aacctggtgctggacgagatcaagagggccgtgtcagaaaggcaggcgctgcgagacgga gacggcaatcgcacctggggccgcctaacaggtgaggtctggggcgggagggggaaaagg cgggggcgggctggttgtaggttccctggtctcagtcccgatccttcccgacccacccag AGGACCCCCGATTGAAGCCGTGGAACGGCTCACACCGGCACGTGCTGCACCTGCCCACCG TCTTCCATCACCTGCCACACCTGCTGGCCAAGGAGAGCAGTCTGCAGCCCGCGGTGCGCG TGGGCCAGGGCCGCACCGGAG gtatgggcgcagacagggaggagcacggggtggggggacgggtggcccccgcaccctttc cagcgtcgggcctccgtcccccatagtgtcggtggtgatgggcatcccgagcgtgcggcg cgaggtgcactcgtacctgactgacactctgcactcgctcatctccgagctgagcccgca Exon 4 + 6359 6542 1 Internal 184 100 Excellent cacctgcccaccgtcttccatcacctgccacacctgctggccaaggagagcagtctgcag cccgcggtgcgcgtgggccagggccgcaccggaggtatgggcgcagacagggaggagcac ggggtggggggacgggtggcccccgcaccctttccagcgtcgggcctccgtcccccatag TGTCGGTGGTGATGGGCATCCCGAGCGTGCGGCGCGAGGTGCACTCGTACCTGACTGACA CTCTGCACTCGCTCATCTCCGAGCTGAGCCCGCAGGAGAAGGAGGACTCGGTCATCGTGG TGCTGATCGCCGAGGCGAGTGAGCCGGGACGCGGGGTTGGGGGACATTCAGAGGAGCCCC CGCG gtgcagaactgacagcaggaaccattccgaggagaaagctgtcggaagttcagttgctag tttcattcgcaaatgctccgagatagaaagttgaaagggctttctggcaccctctacccc tacccatcgcccccgccaccccctagtccttggccatgcgagtcccaaagggaaagggcc Exon 5 + 7229 7342 2 Internal 114 75 Good aggggtgggtgtgcagaagtggcccagcccctctggagctctgctacctcagttggctgg gtgtagggggtggtggggggctggcactgggtgagcctcaagaaagggccacagtctggt gggctcggcccctctcagcccctggaggctgcatacggactaggccttcccgtcccccag GTTCCCCACGGAGATCCATTCTGGGCTCCTGGAGGTCATCTCACCCTCCCCCCACTTCTA CCCTGACTTCTCCCGCCTCCGAGAGTCCTTTGGGGACCCCAAGGAGAGAGTCAG gtactagttactcccccataccctcagcaacccgcctgcctgtgctgagaacccatctac tggtgtttgagtccagggtgtttccctgcagtgccctgaattctccatgggaggacccgt gcatgggggtggggggacagaagctgcccacccagcggcttctctgcggagccacaatgg Exon 6 + 7567 7642 2 Internal 76 97 Excellent ctgagaacccatctactggtgtttgagtccagggtgtttccctgcagtgccctgaattct ccatgggaggacccgtgcatgggggtggggggacagaagctgcccacccagcggcttctc tgcggagccacaatggaggtggaggggtctgaacttctgaggccccgccccggcccacag GTGGAGGACCAAACAGAACCTCGATTACTGCTTCCTCATGATGTACGCGCAGTCCAAAGG CATCTACTACGTGCAG gtcagccccaagccctgcgttgccctgccctgccctgcgccgccctgccctgcgatgggt ctggtccatctgggtgcccttcctcagccccagcccctctctgctcacctcgcagctgga ggatgacatcgtggccaagcccaactacctgagcaccatgaagaactttgcactgcagca Exon 7 + 7758 7872 0 Internal 115 100 Excellent aacagaacctcgattactgcttcctcatgatgtacgcgcagtccaaaggcatctactacg tgcaggtcagccccaagccctgcgttgccctgccctgccctgcgccgccctgccctgcga tgggtctggtccatctgggtgcccttcctcagccccagcccctctctgctcacctcgcag CTGGAGGATGACATCGTGGCCAAGCCCAACTACCTGAGCACCATGAAGAACTTTGCACTG CAGCAGCCTTCAGAGGACTGGATGATCCTGGAGTTCTCCCAGCTGGGCTTCATTG gtgtgcccctccccttacctgacggtgcctttcagtcccacctgcctctgccatcctctc tcccagtcccactgtgtccactgtgagcctttgcccaggtgggccctgcctggtgtgcgt gctacagccccacctggcctgttctcattgcctgtgcatcagacatgtctgccctcatca Exon 8 + 8190 8320 1 Internal 131 100 Excellent cctgttctcattgcctgtgcatcagacatgtctgccctcatcacctgtctgcctccctgc cccgttatgcccacacctgcctgaagcctgcccctgggtttgctgtgggactcgggggcc gctgcagggagaaaggaagtaggcagagcagcactgcccactcaggcccctccccaccag GTAAGATGTTCAAGTCGCTGGACCTGAGCCTGATTGTAGAGTTCATTCTCATGTTCTACC GGGACAAGCCCATCGACTGGCTCCTGGACCATATTCTGTGGGTGAAAGTCTGCAACCCCG AGAAGGATGCG gtgagcaagagctggcgggactggcaggggcagggccaaggggcaggcagcctccacccc aaactgtgtccctgtccttgcatctgctcacatagagcactgtcagctgtgggagggccc tggtagtccccaggagaggccgtgttgaggaaggagggctaagccgagccctggggtgtt Exon 9 + 8516 8623 0 Internal 108 97 Excellent cgggactggcaggggcagggccaaggggcaggcagcctccaccccaaactgtgtccctgt ccttgcatctgctcacatagagcactgtcagctgtgggagggccctggtagtccccagga gaggccgtgttgaggaaggagggctaagccgagccctggggtgttgcccaccctccacag AAGCACTGTGACCGGCAGAAAGCCAACCTGCGGATCCGCTTCAAACCGTCCCTCTTCCAG CACGTGGGCACTCACTCCTCGCTGGCTGGCAAGATCCAGAAACTGAAG gtgggctgcactgcacgctctccctaggccgggatcaaggtcggggcccacgccatcact gctgtccctcctccgctgcaggacaaagactttggaaagcaggcgctgcggaaggagcat gtgaacccgccagcagaggtgagcacgagcctgaagacataccagcacttcaccctggag Exon 10 + 8705 8898 0 Internal 194 100 Excellent gaccggcagaaagccaacctgcggatccgcttcaaaccgtccctcttccagcacgtgggc actcactcctcgctggctggcaagatccagaaactgaaggtgggctgcactgcacgctct ccctaggccgggatcaaggtcggggcccacgccatcactgctgtccctcctccgctgcag GACAAAGACTTTGGAAAGCAGGCGCTGCGGAAGGAGCATGTGAACCCGCCAGCAGAGGTG AGCACGAGCCTGAAGACATACCAGCACTTCACCCTGGAGAAAGCCTACCTGCGCGAGGAC TTCTTCTGGGCCTTCACCCCTGCCGCGGGGGACTTCATCCGCTTCCGCTTCTTCCAACCT CTAAGACTGGAGCG gtcagtgccagcaccatgggtctgcgatgggggcggggctgggtggcccccagggtgtag gcttcaccggcaagttatcctcacgttcttcagtttccgcatctgaagtgggcctcgtaa tggtagctaccttgtgaggactaagtcaggcagcccctaggagctcagggatgtttcctg Exon 11 + 9209 9322 0 Internal 114 96 Excellent cttgtgaggactaagtcaggcagcccctaggagctcagggatgtttcctgtcaccatcct cccagaggaaggccctggtctctttgcacagcctgacagctgcctggggggccctcctgg cgcaggcctggcctttctctgctgggccctgggtgctgtgctggaacgctgcccctgcag CAGCTCACAGGCCTGCCTGGCTGCAGGTTCTTCTTCCGCAGTGGGAACATCGAGCACCCG GAGGACAAGCTCTTCAACACGTCTGTGGAGGTGCTGCCCTTCGACGTAAGTTCG gtgggtgtggtgtgcactgaagccgggcctcctgtgaccacctgcctcagcccttgattc tgcccccagaaccctcagtcagacaaggaggccctgcaggagggccgcaccgccaccctc cggtaccctcggagccccgacggctacctccagatcggtgggtagggtttgggggagagc Exon 12 + 9392 9479 0 Internal 88 100 Excellent ctcacaggcctgcctggctgcaggttcttcttccgcagtgggaacatcgagcacccggag gacaagctcttcaacacgtctgtggaggtgctgcccttcgacgtaagttcggtgggtgtg gtgtgcactgaagccgggcctcctgtgaccacctgcctcagcccttgattctgcccccag AACCCTCAGTCAGACAAGGAGGCCCTGCAGGAGGGCCGCACCGCCACCCTCCGGTACCCT CGGAGCCCCGACGGCTACCTCCAGATCG gtgggtagggtttgggggagagcgtgggctggggttcagggacaccctctcaccactgcc ctcccacaggctccttctacaagggagtggcagagggagaggtggacccagccttcggcc ctctggaagcactgcgcctctcgatccagacggactcccctgtgtgggtgattctgagcg Exon 13 + 9549 9661 1 Internal 113 100 Excellent tcagcccttgattctgcccccagaaccctcagtcagacaaggaggccctgcaggagggcc gcaccgccaccctccggtaccctcggagccccgacggctacctccagatcggtgggtagg gtttgggggagagcgtgggctggggttcagggacaccctctcaccactgccctcccacag GCTCCTTCTACAAGGGAGTGGCAGAGGGAGAGGTGGACCCAGCCTTCGGCCCTCTGGAAG CACTGCGCCTCTCGATCCAGACGGACTCCCCTGTGTGGGTGATTCTGAGCGAG gtgaggctgggcagggccaggccaggcacggggagcagccagggagaccctggcggagct cagaggccctgctgaccctgggtccggctcttccagatcttcctgaaaaaggccgactaa gctgcgggcttctgagggtaccctgtggccagccctgaagcccacatttctgggggtgtc --------------------------------------------------------------------------------