-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (14900 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (3 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 4894 4989 0 Initial 96 58 Marginal aggaaggtgggagtcaggtcagcgtggccacagattctgttacagcgtggagagagtgct gtgggagtgtagtcatagggaggcctggctctgtctgtgatgttacagaaggagtcacct gaagtggcctgaaaggatgtgtgggtggctggcaggtggcgctgtgggtcaaattccagg ATGAGGGACCAGCTGGAGCAGAGACACAGCAGCGTCCAGGTATATGCTTACTGGGGAAAA AGCAGCCTGCTGAGGCCAGAGTGCAGGGTCCATGGG gttagtggttggaggtaaggttgaaaagggatgtttcagacagtctgtctgaagggcttt ggatgtcatcataatgagtttgagtttgagtttgtgggcagtgcagcctctgatggtttt taaagcaagttaatgtcgtgaccaggtgtacttgtcaggaaggatgcgctgttgctgttg Exon 2 + 8374 8531 1 Terminal 158 78 Good ctttggggtgtaaagggtagaccagaggcaggacagtcaaggagttatggtctggagtgg cagctggctgggaattggggagtgtttcagatcctttcaagtaatgtggtctggtagagc ttggaggattggtgggaccatgcctttttctcactggtttgtgtcctggttccttcccag AGCCTGGCAGAGAGCAGGTGTGTGATACACGTCGTCAGGTGACTGACCGAGGAATTCAGG GCAAACAGATCATCTCAATTTGCCTTGCTGATGTGCCAGCTGGGATTACGCTGATGGATG AAGCTCTTCAGAGCTATGGGCAATATCTACATATTTGA ttgtcaagaaacttcgtgtggaaatagcttcaaacttacacaaattgcaagaataaaaaa tagtataaggatattcgtacacactctctttactcagattcacctgttaatattttgctc catttgctctctatgtgtgcagagtatgtttttgttctgaaccatttgagaagttgcatc Exon 3 + 11278 12615 0 Single 1338 93 Excellent gcatggagccacgagcctttgtgtgacggtttgctttctctctcctgtctttaggtgcat ggctgcctcctaatcccatagtccagaggaggcatccctaggactgcgggcaagggagcc gggcaagcccagggcagccttgaaccgtcccctggcctgccctccccggtgggggccagg ATGCTGAAGAAGCAGTCTGCAGGGCTTGTGCTGTGGGGCGCTATCCTCTTTGTGGCCTGG AATGCCCTGCTGCTCCTCTTCTTCTGGACGCGCCCAGCACCTGGCAGGCCACCCTCAGTC AGCGCTCTCGATGGCGACCCCGCCAGCCTCACCCGGGAAGTGATTCGCCTGGCCCAAGAC GCCGAGGTGGAGCTGGAGCGGCAGCGTGGGCTGCTGCAGCAGATCGGGGATGCCCTGTCG AGCCAGCGGGGGAGGGTGCCCACCGCGGCCCCTCCCGCCCAGCCGCGTGTGCCTGTGACC CCCGCGCCGGCGGTGATTCCCATCCTGGTCATCGCCTGTGACCGCAGCACTGTTCGGCGC TGCCTGGACAAGCTGCTGCATTATCGGCCCTCGGCTGAGCTCTTCCCCATCATCGTTAGC CAGGACTGCGGGCACGAGGAGACGGCCCAGGCCATCGCCTCCTACGGCAGCGCGGTCACG CACATCCGGCAGCCCGACCTGAGCAGCATTGCGGTGCCGCCGGACCACCGCAAGTTCCAG GGCTACTACAAGATCGCGCGCCACTACCGCTGGGCGCTGGGCCAGGTCTTCCGGCAGTTT CGCTTCCCCGCGGCCGTGGTGGTGGAGGATGACCTGGAGGTGGCCCCGGACTTCTTCGAG TACTTTCGGGCCACCTATCCGCTGCTGAAGGCCGACCCCTCCCTGTGGTGCGTCTCGGCC TGGAATGACAACGGCAAGGAGCAGATGGTGGACGCCAGCAGGCCTGAGCTGCTCTACCGC ACCGACTTTTTCCCTGGCCTGGGCTGGCTGCTGTTGGCCGAGCTCTGGGCTGAGCTGGAG CCCAAGTGGCCAAAGGCCTTCTGGGACGACTGGATGCGGCGGCCGGAGCAGCGGCAGGGG CGGGCCTGCATACGCCCTGAGATCTCAAGAACGATGACCTTTGGCCGCAAGGGTGTGAGC CACGGGCAGTTCTTTGACCAGCACCTCAAGTTTATCAAGCTGAACCAGCAGTTTGTGCAC TTCACCCAGCTGGACCTGTCTTACCTGCAGCGGGAGGCCTATGACCGAGATTTCCTCGCC CGCGTCTACGGTGCTCCCCAGCTGCAGGTGGAGAAAGTGAGGACCAATGACCGGAAGGAG CTGGGGGAGGTGCGGGTGCAGTATACGGGCAGGGACAGCTTCAAGGCTTTCGCCAAGGCT CTGGGTGTCATGGATGACCTTAAGTCGGGGGTTCCGAGAGCTGGCTACCGGGGTATTGTC ACCTTCCAGTTCCGGGGCCGCCGTGTCCACCTGGCGCCCCCACTGACGTGGGAGGGCTAT GATCCTAGCTGGAATTAG cacctgcctgtccttcctgggcccctccttgccacatcatgagctgaggtgggaccacag tccccaggctgcatcggcctgcctgtgtttccctcttaggtgcatttatctttttgattt ttccgagtggcatttaagtgcacaaatgataacaagaggattattctcccgttctcaagg --------------------------------------------------------------------------------