-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (14335 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (7 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1970 2105 0 Initial 136 76 Good acggccggctcatctggagtcaccgctggccgccccaggcccaccgcccgtcactggttc caagctggctactcgacatctagagcccgcgaagctggcgcctcgcgcgcggagaaccag acagcgccgggagaagttcctgcgctcagtaacctgcggccgcccagccgcgtggacggc ATGGTGGGCGACGACCCTTACAACCCCTACAAGTACTCTGACGACAACCCTTATTACAAC TACTACGATACTTATGAAAGGCCCAGACCTGGGGGCAGGTACCGGCCCGGATACGGCACT GGCTACTTCCAGTACG gtaagtacccccaagtccgctggaagcacccgtgcacctggtccccagctatgtggcttc tcgacgtggctgcctgggcgcggcgggccccggtcctcgcagatccgatccctcccccac gcgcctgcagtggcagccctggaatccagtgcaaaccgcgcgtctggcccctcctgcttc Exon 2 + 2459 2581 1 Internal 123 95 Excellent ctgcttccttttcacattgctttgcagtcccgggcgtccccagttctcttgctgtcctcc gctccactctgcagtcccggtgggcgaagggtgaggagtaagggacctagaggggtaggg agttggagcggggggcgccgggttgtttcactgctgcgcccgtcgcctgctgacgtttag GTCTCCCAGACCTGGTGGCCGACCCCTACTACATCCAGGCGTCCACGTACGTGCAGAAGA TGTCCATGTACAACCTGAGATGCGCGGCGGAGGAAAACTGTCTGGCCAGGTACGGGCTGA TAT gtctgaggccccgctccccggtctaccttcagggggcgctctggtgcctggttctgactg ctactgcttcgcgcagacaagtgttaggaagtgggacaagagctgggaagtgggacgtga cctcctgggcatgctgacctggacggagagttaatatttttgaagatttctgtgggttct Exon 3 + 2614 2735 1 Terminal 122 75 Good gcgcccgtcgcctgctgacgtttaggtctcccagacctggtggccgacccctactacatc caggcgtccacgtacgtgcagaagatgtccatgtacaacctgagatgcgcggcggaggaa aactgtctggccaggtacgggctgatatgtctgaggccccgctccccggtctaccttcag GGGGCGCTCTGGTGCCTGGTTCTGACTGCTACTGCTTCGCGCAGACAAGTGTTAGGAAGT GGGACAAGAGCTGGGAAGTGGGACGTGACCTCCTGGGCATGCTGACCTGGACGGAGAGTT AA tatttttgaagatttctgtgggttctgtctcaaagtgcagcaggaatcacagaggtggag gaaacccttatcctggagactgaaagtctcatgctctttttccaagatacttaaacttgg gagtcaattgttccaatcacttttcataaaacaactatacagtaattcaaaaaatttatt Exon 4 + 5304 5447 0 Initial 144 51 Marginal cctggggaaaaaaaaaccctagcatgaatctctcttttagaagataaatttggtctcaat tttaatgtgaaaacaaatttgtgaagccatgggggaagtcatttaatatcttcattgctt tctctgtatgtaactgaccaccatctttttgttttgtgggacatcagacattaccacagt ATGGATGAGTTTAGCCACTATGACCTGCTTGATGCCAACACCCAGAGGAGAGTGGCTGAA GGCCACAAAGCAAGTTTCTGTCTTGAAGACACATCCTGTGACTATGGCTACCACAGGCGA TTTGCATGTACTGCACACACACAG gtatgttggcaccctgaaatccagaacctcaagcctcagagagaaacgggtcatctaccg ttagttagcattaaatagcatttcatgaagagcacacacatttttatcaaaaggatacag agactgttctcaaagaaaactgtagatgatataccccatgagtctagtattttctttcct Exon 5 + 8871 8966 0 Internal 96 91 Excellent gctggaggtgctataaggctgagtaataaatacttctcaagggagatgaaatataagtat agttttatgtcagactcttgtaagtactaacttaaaatttaatttgcaaataatagcata ttatttatcatagtctgaccacataccataattttaaattttttattttgtttatcttag GGATTGAGTCCTGGCTGTTATGATACCTATGGTGCAGACATAGACTGCCAGTGGATTGAT ATTACAGATGTAAAACCTGGAAACTATATCCTAAAG gtaaagacctttgaaaatatatcatatattgatattgcagatcaataggccctcttctct ggattcaaatgttaaataatcatggtattggaagcaattatacatcctcaaactatttat aaacaatctaatctaatctaatctgtcttattttaaagaacttcaggggaaaatatgcag Exon 6 + 9292 9411 0 Terminal 120 100 Excellent tcttattttaaagaacttcaggggaaaatatgcagtctctttccataacgtctccagagt ttaaccacttacttaagttaaaatcccttccctgcttgatttagctaagtcctcattaac aatttccttattgtagccctatggaaaaagaaatactgaggaactctttgtgttgcccag GTCAGTGTAAACCCCAGCTACCTGGTTCCTGAATCTGACTATACCAACAATGTTGTGCGC TGTGACATTCGCTACACAGGACATCATGCGTATGCCTCAGGCTGCACAATTTCACCGTAA gtgttatttgcttagctaagtaattgttgtcacaaataatttttgttcatgccaaacatt atacatagaatgtatctgtttctgctactacagcagctttcttgtaagcagaccaaaggc agaaaatggtatgcagtctgattttatttttttaaataatggaaggcaaaggagaatgta Exon 7 + 11622 11785 0 Initial 164 59 Marginal agaatatttgagaaaaaaaccccacaccttcaggatagtaatacttgcttcttacatttt gactttcacatcaggccttccttcctaggaatcagagttcagacagaggagaggtctctt tgggctgagtttcaggagtgactttaggatacatttgaattgagccttgaagtctgggga ATGCACCGGGGAGCATTAAGGAAAGGAAGCCCAGGGCAAGTCAACGTCACAGGCAACTTG CATGGCAGGAGGAAACTGCAGGGCATGTTTGGAAAAACAAGTCTTCTAGTTTGGCTAAAG CATGAATTTTGTGGAGTTACGAGTTGGACAAAAAGGATGGAAAA gtaagttgagccagatggaagacagccctgaagagcaggctaaaatttattctggaggca gtgggaggctgaagctttttgagcaggaagtgtaacttgcctaaggccatcaggtcagtc tggtggctgtgtaagcagcagtgagtgtgactctgaagacatatcatgtatcagttcact --------------------------------------------------------------------------------