GENSCAN 1.0	Date run: 16-Jan-104	Time: 14:11:28

Sequence MAPK9_1 : 47226 bp : 42.51% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1250   1371  122  1  2   75  111   166 0.826  17.31
cagaacttggtcagattgactttatcaacttacagccacattgtcttacataccaataag
ttcagaactctcttacgtgagctgcgtatgtacttccggtaagaatgcacgttcattctg
tttttctttgaagggatctgaaacttgcccacccttcgggatattgcaggacgctgcatc
ATGAGCGACAGTAAATGTGACAGTCAGTTTTATAGTGTGCAAGTGGCAGACTCAACCTTC
ACTGTCCTAAAACGTTACCAGCAGCTGAAACCAATTGGCTCTGGGGCCCAAGGGATTGTT
TG
gtaagtatggtctgttttaatagcgtggattgagtttttgctgtaataaaaagtaaaact
aaagtgtcaggatttagaaacattgatgattaaaaaaaaaactctgttataggtttatga
gctaaattgaatcaactgcttgctctagttctgtgtagtcaggctgtagggtacaaaccc

 1.02 Intr +   1775   2015  241  2  1  103   98    52 0.469   4.33
tcttttttgtttgtttctttttcctttcattttttttttcatttctcctgtcattatgat
atcagagtagtaggtatgacagtgagttgtaacagaaatttggagttttattcatttctt
catcatggccaccttttcccccctccccttttattcccgatcactcctgttcatttccag
GCGCCATCATTGCAGTGCCTTGCCATTCATTGGCAGGATGAGGCCAGTCAGTGTCATTGT
CACTCCATGGATTAACCAGGAAGGGATGCTGTGTGAGGGGTTGGGCTGGCCATCTCTTCC
TTGGTGTCTCACTTCAACTGTGTGTCCAGCCCAGAACGTCAGAATCGTTAGTCTGACCCT
GAACGTTAGTCTCTTGCATGGTAAGACGGTCAGCCGCCGCAGCATCACGGGCCAGCTCAA
G
gtaaagctcttcacatgtttcctagactgcagctatcagcacttcccacactttttaccc
cttatttttctgggcagaacttttttttttctttttctttttctttttttttggtcaatg
aaaacaggattacctttgcgcctaaagaaaccgtggtgcagttaaacatcgcgtgtttac

 1.03 Term +   7116   7226  111  2  0   32   32    75 0.135  -6.12
atccagaatgaaagctgcagaggcaaaaatggtagaagagcccaaaacagagaaggtgtt
agttttctattgctgcataacacattaacacaaacttagttgtttaaaacaacacctatt
gattatctcatagttctatagtcagaaacctgggtgggtttgcctgggttctttgcccag
CATCTCACAAAGCTGAAGTCAAGATTTCGACTGGGCTGGGCTCAGCTCACAGATGGAGGT
TCTGGAAGGGTATCTGCTTCCAAGCTCCTTCAGCCTGTTGGCAGAGTCTAG
ttccttacagctttaggtctgtggttcccaatctcttgatctctttcagtcaggcgctgc
tgtctgctcccagaggctgcatgttttccttctcaagtgacctcctccatcttcaaggca
gcagtggcatgcccagtccttcccatactcacatctccctgattttccaccctttccatg

 2.06 PlyA -   8477   8472    6                               1.05
 2.05 Term -   8924   8737  188  0  2   24   41   161 0.043   1.67
 2.04 Intr -  18395  18347   49  2  1   91   99    73 0.535   6.03
 2.03 Intr -  18749  18623  127  1  1   89   47    76 0.308   3.36
 2.02 Intr -  22702  22061  642  0  0   34   17   699 0.379  47.61
 2.01 Init -  23004  23000    5  0  2   67   60     0 0.605  -5.38
 2.00 Prom -  23085  23046   40                              -5.85

 3.02 PlyA -  23243  23238    6                              -0.45
 3.01 Sngl -  24062  23430  633  2  0   13   48   330 0.309  17.43
 3.00 Prom -  25081  25042   40                              -6.45

 4.01 Init +  29323  29481  159  0  0  108   56   123 0.890  10.98
tagccggagcggaggcgcttggcaggtggagtaacgcccacacgagttccttggcctgtg
agtaagagtcgtcacagtgggaaggccaaatggaaacctgaaactgcccccaagatagta
aatcaaaaacaagatcacaccctgcagggcccggggtgggtggaggagactagggccacc
ATGGAAGCCTCAGGGGAGCAGAGACAGTGGTATCTTGCATCCCAGTCTAACTCGTTAGTC
CAGCCCTTGAAGAAGCTGCATGGATTCTGGAGAATGACCCCAGACGGCCACAGGCTTACG
GCACTGGCAGTCCTGGCCGCAGCTGCTGTGCATGTCAAG
gtgcagttgttgctggagcagattaataaggcctcaggtctggcatgttgatggggcaaa
tgcatcctccacactgattagaagagaggcccagacagcgcccacactgctgcaggctgg
acagcaatgttctctcacagccttgctctaagcctttgctaacgttcccaccctcccata

 4.02 Intr +  29848  29966  119  0  2   56   60    75 0.589  -0.16
ccgcaagagacctggcccagacttcacttatgccctgacccctgacccctgaccccacga
accctgcaagtggaggagccctgagagtgtttggggtcttcgggtttcagtgtctactta
gagctgtgtccattcatcctcaagagtgcctggctgttcttacccggtgggtggccacag
GTACCTGTGGGGAAGGACCGGCAAGGCCAGACAGTGGACACCTGTCATGATGTGCTCCTT
CCTGGGATACCTCTCAAGCAGTGGGTCTGGATCCCAGAGTTGAGCGGGCAGTGGGGGAG
gtcagcacctgccccactcatgctgcgggtgctgtgggtaccctcactgctgcccacagg
gtagcgttgggttccaggcattttgggagccaagccccgatccaggcgtcacttggatct
gtacttggcatttgtcttctttgttctgagtgattttcaagacttgaaggggcagaactg

 4.03 Intr +  30949  31015   67  1  1   97   39    64 0.318   0.39
attattttatctgttagtaatttatgttctaaaatgcctgttcttgtcatactctttgat
tttaaaaaaggaaacaagaagcgaattcgttcatttggtcttagctccctgacttggtcc
tcacagcggagcgtccctggttgaatgtgggctgcttctccctggctttccttcatgcag
GGAGGCAGCCCGGTTTCTTCCTCTCAGGCCTTTCTGGGAACCGGGGGTGTCTGCACAGTA
CTCTAAG
gtggaatggaggggctgggggcctctttttggggccaggtagagattgtgactgcatttt
taaacattatatgtttatcatttaaatcttacagaatctaggaagcctagaaacaggtca
cttagcagcatggcagtgtaattgtacctgttgtcaatgtcgaaatggcttcctgcttgc

 4.04 Intr +  31110  31316  207  2  0   54   38   116 0.323   1.55
ctggctttccttcatgcagggaggcagcccggtttcttcctctcaggcctttctgggaac
cgggggtgtctgcacagtactctaaggtggaatggaggggctgggggcctctttttgggg
ccaggtagagattgtgactgcatttttaaacattatatgtttatcatttaaatcttacag
AATCTAGGAAGCCTAGAAACAGGTCACTTAGCAGCATGGCAGTGTAATTGTACCTGTTGT
CAATGTCGAAATGGCTTCCTGCTTGCCCTGATGACAGCCCCACAGCCTTCACTGAGGCAT
GCCGCCTGCAACCCCCCTTGTGGCCCATCAGTTGGGGTGTCTTACAGGCAGGTGCTAGGC
AGTGCTACTGAACCTGCAACTTCCTGG
gtaaagtatcctcatgccttacgccatgtcagtggcttggcagtttgacattgcaggtgc
actactcttgtgaaaagaatgggtgtgggttgtttacaagtcacagtttctcaagtgagt
ttgcaggccgaagtccccaggcaaaagtcaaattcctaaggcctgaggaaggggctaggg

 4.05 Intr +  32673  32838  166  2  1   91  113   129 0.983  14.31
gctttaggctgatttgttttagtttcaatttgagagtaagattttccaaagttgttccca
aatctcagagttcagttcactccctacactctcacactggcttcacgaccctcacggatg
tgaagtagtttatttagcatgcttcattcattttactaatttaagccatttctttcctag
GATTTGAAGCCTAGCAACATTGTTGTGAAATCAGACTGCACCCTGAAGATCCTTGACTTT
GGCCTGGCCCGGACAGCGTGCACTAACTTCATGATGACCCCTTACGTGGTGACACGGTAC
TACCGGGCGCCCGAAGTCATCCTGGGTATGGGCTACAAAGAGAACG
gtgagtatagccggggctggaagaggctgggatgtttagaaattgctctagcggtggtct
cgagttttttctctttcctttgaaccatatgatatatactgtggggactgttacacccag
aatatagcatgatccagagataagaaataattaattgtgtttttccattggttaaaatca

 4.06 Intr +  39020  39238  219  0  0  -15   69   193 0.378   4.45
aactgtgatcatagtttatgaagatgcagagtgtgagagttttaaaaaatagtgtaactt
ggaaacccaaaccttatttgaatattatttcaaaattccgctgctgatccagtggggtgg
cctagtcgataggtttaaatattattcaagtgatgctgccgcatgtactgtgaatacaag
GTACTTCAGTTGTATTTTCCTCAAGAAACTCCTTAGATATTGATCAGTGGAATAAAGTTA
TTGAGCAGCTGGGAACACCATCAGCAGAGTTCATGAAGAAACTTCAGCCAACTGTGAGGA
ATTATGTCGAAAACAGACCAAAGTATCCTGGAATCAAATTTGAAGAACTCTTTCCAGATT
GGATATTCCCATCAGAATCTGAGCGAGACAAAATAAAAA
gtaagatatcctttttttcttatacttgtgttttgtaattcaggtggtgctttcactctt
tcatgtttgtattctaaaaacctgtgttttgggagagaaagtcattttaggcctgaagtc
tgaggtacgaaggcactgaggagagaaagcttaaaggtctagaagctttatcctctataa

 4.07 Intr +  40656  40780  125  1  2   73   78   152 0.589  12.08
gagactccgtctccgaaaaaaaaaaaaaaaattttgggttatattcatcttgaacctatc
aaacatttctcaaaattaatatatctttgttctatctgtgttgtcatatttagttcttta
ttgtatgattctgtttgtttcatattaacagcattaatttaatatttgttgtcaccctag
CAAGTCAAGCCAGAGATCTGTTATCAAAAATGTTAGTGATTGATCCTGACAAGCGGATCT
CTGTAGACGAAGCTCTGCGTCACCCATACATCACTGTTTGGTATGACCCCGCCGAAGCAG
AAGCC
gtgagtatctgttttgaaaagatttatatagagaggccaggcttatatttccttggatct
tgtctgtccgtccagagtggctacatatgggtagcaagttctccatttgggggctcccag
ttacagaaaggccaagtgttgtctgagacctgggtcgcttgctcttttgctgctggagcc

 4.08 Intr +  40856  41029  174  1  0   73   42   101 0.755   3.21
ttatcaaaaatgttagtgattgatcctgacaagcggatctctgtagacgaagctctgcgt
cacccatacatcactgtttggtatgaccccgccgaagcagaagccgtgagtatctgtttt
gaaaagatttatatagagaggccaggcttatatttccttggatcttgtctgtccgtccag
AGTGGCTACATATGGGTAGCAAGTTCTCCATTTGGGGGCTCCCAGTTACAGAAAGGCCAA
GTGTTGTCTGAGACCTGGGTCGCTTGCTCTTTTGCTGCTGGAGCCCCAGCTCAGAGTACC
TCGGGAATGAACTTCCGCTTTGGTGCTACCAGTCTCCATTTTGCAAATGCTGCT
gtgagctcatagtttattaagcatctattctgtgccattggctttggttacatcctcttg
tttaggccacttaaccagagaggctgagcaacttgctgaaaaatcacacgtctgtttatc
cttccctaaaggcattgtagctcctggttcccccgctggaggagctccactctgagtttg

 4.09 Intr +  41824  41887   64  0  1   68   98    80 0.740   4.37
ttattttgattctaaagttgatataatatcacatgacaaatctttattaaaccacgtgtt
gaattaaactaaatccatatcataaatagactagaagtcttccaagcaattttacctttt
ttagtgcctcatttttttttgaggcattactgttgactttacatatgatttaatttttag
CCACCACCTCAAATTTATGATGCCCAGTTGGAAGAAAGAGAACATGCAATTGAAGAATGG
AAAG
gtaaagatggagcttattttgatccttccttttgacatttcttccaatcctgtagagcag
aggcttttcattttgtgacatttcccttcaggaaggggcaagaaaccctgcgacccactt
agcctctttctccccagtttccagtagaaaatgaacttgaagagaacagagttagagagg

 4.10 Term +  45285  45427  143  1  2   42   44   168 0.185   4.91
ccaaagaaagactcaaggaaaagttcagaaagtccagctgactgacttcttgtctatact
catagttaggattgggaaactgcaaaaggacagagccgagaaatggcctgcagtctcgct
gcctggatttgcagcaatgtcgtgcctcagattttattatatttggttttcttagcacag
ATGCAGCAGTAAGTAGCAACGCCACTCCTTCTCAGTCTTCATCGATCAATGACATTTCAT
CCATGTCCACTGAGCAGACGCTGGCCTCAGACACAGACAGCAGTCTTGATGCCTCGACGG
GACCCCTTGAAGGCTGTCGATGA
taggttagaaatagcaaacctgtcagcattgaaggaactctcacctccgtgggcctgaaa
tgcttgggagttgatggaaccaaatagaaaaactccatgttctgcatgtaagaaacacaa
tgccttgccctactcagacctgataggattgcctgcttagatgataaaatgaggcagaat

Predicted peptide sequence(s):


>MAPK9_1|GENSCAN_predicted_peptide_1|157_aa
MSDSKCDSQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVWRHHCSALPFIGRMRPVSVI
VTPWINQEGMLCEGLGWPSLPWCLTSTVCPAQNVRIVSLTLNVSLLHGKTVSRRSITGQL
KHLTKLKSRFRLGWAQLTDGGSGRVSASKLLQPVGRV

>MAPK9_1|GENSCAN_predicted_peptide_2|336_aa
MREKPFDCKECGQVFRHFSSLSKHERTHTGEAPFDCKECGQVFRHSSSLCKHERTHTGEE
PFDCKECGQVFRHSSSLRKHERTHTGEKPFDRKGCGQVFRHSNSLCKHEKSHTGEKPFDC
KECGQVFRHSSSLCKHGRTHTGEKPFDCKGCGQVFRHSSSLCKHEKFHTGEKPFDCKECG
QVSRHSSSLGKHEKSHTGEKPFDYKECGQVFRLAMCSTLMSNRHLKAISRTELLIPSLAQ
SALLTAFIISVESSLILQWVTNPDARVTLFKQKAVDNVKLFARAFLQICTAASSARGVTS
ESCLCVVPVHEGSHLRAASGWFHILTSTWYHQQLSF

>MAPK9_1|GENSCAN_predicted_peptide_3|210_aa
MGERLCECKEGSHCGEIFGQIPNLNLKKKISADVNSCECRVCGQVFTCPSSLNRHILSHS
GHKLHAWEKRGVKPYKCKQCEKTFISLTNVQRHMVTHTGNRPHKCKKCGKTFKFLYLLQR
HKVIYNGEKPCEWKKGGKALRFCSYFQKHKRTHSGEKPYKCQKCEKAFGHSGYLHNHKGA
HAEEKPRECRKCGKRFSFCSYFQRHKELTM

>MAPK9_1|GENSCAN_predicted_peptide_4|480_aa
MEASGEQRQWYLASQSNSLVQPLKKLHGFWRMTPDGHRLTALAVLAAAAVHVKVPVGKDR
QGQTVDTCHDVLLPGIPLKQWVWIPELSGQWGREAARFLPLRPFWEPGVSAQYSKNLGSL
ETGHLAAWQCNCTCCQCRNGFLLALMTAPQPSLRHAACNPPCGPSVGVSYRQVLGSATEP
ATSWDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENG
TSVVFSSRNSLDIDQWNKVIEQLGTPSAEFMKKLQPTVRNYVENRPKYPGIKFEELFPDW
IFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVWYDPAEAEASGYIWV
ASSPFGGSQLQKGQVLSETWVACSFAAGAPAQSTSGMNFRFGATSLHFANAAPPPQIYDA
QLEEREHAIEEWKDAAVSSNATPSQSSSINDISSMSTEQTLASDTDSSLDASTGPLEGCR