-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (10846 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (4 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 3793 3894 0 Initial 102 90 Excellent gtcatagggaagaaccctacataggcagttgtcttcagtaaaggaaaggatcaaaattat actttccatttggctgacattgattattcagtataattgtgctttcctttagctttatat ttgttctgacaaattgctgagtacctttaatatgctatatagtgtgctagggattaaaca ATGGAGGAAGAAGGTCTAGGTTCTGTCTTCAAAGAGATTGCTGTGGTGGGTAAACGAAGG AAAACAGTCACAACGTGGCATGTGGTACATGCGGCATTAGAA gtgagcacaggggcttggggtaactgagaggcttcccagtttaaaacggggagggcagag aggcatgaaaaaggctcaggtgttactggaattggaagtaaggcagtatgacagaagtgg acagtatatattgggctgtcagcagagatgaggccagagggatatgcagggatgagttca Exon 2 + 4002 4187 0 Initial 186 48 Marginal caaagagattgctgtggtgggtaaacgaaggaaaacagtcacaacgtggcatgtggtaca tgcggcattagaagtgagcacaggggcttggggtaactgagaggcttcccagtttaaaac ggggagggcagagaggcatgaaaaaggctcaggtgttactggaattggaagtaaggcagt ATGACAGAAGTGGACAGTATATATTGGGCTGTCAGCAGAGATGAGGCCAGAGGGATATGC AGGGATGAGTTCAAGAAAAGCCTCGAATGTCAGGCTAAGGAGTTGGGATTTTCTTCTATA GGCCAGTGTTGTCAACCTGTGGGTGCAGATCCTTTGGTGGGAGAGCAAATTAATGAAAGC ATACAT gtatgttattatcagatcatgcaaaacagaatctattcaagaatgtaaaaaaggagtaat ttaattcagatagttgattaaacaagtgatggaagccaaacaatggatgttgagactacc tagggattaccaagagcaggaagtcattactgcctccagctggatggatatgaggaagag Exon 3 + 6464 6818 0 Internal 355 92 Excellent aagggtctatttcattaaaatgttttgctatgcacaattttagagagtagaggatatttt gatccctaaccaaaattaaaccagtccatttgtgaaatttctttgcttcacctttgtgtt ttcctcgttccattggtttttgttgttgttgttttgttttattttgttttttctttttag GTTGTAGACTCTTGTGCTGGTTGCAGGCCAAGTGGACCTGTACTGAAAATGGGTCCAATA GGTGCAGAGGCTGATGAGAACCAGACAGTGGAAGAAATGAAGGTGGAACAATACGGGCCA CAAACAACTCCTAGAGGTGAACTGGTCCCTGACCCTGAGCCAGAGCTTATAGATAGTACC AAGCTGATTGAGGTACAAGTTGTTCTCATATTGGCCTACTGCTCCATCATCTTGCTTGGG GTAATTGGCAACTCCTTGGTGATCCATGTGGTGATCAAATTCAAGAGCATGCGCACAGTA ACCAACTTTTTCATTGCCAATCTGGCTGTGGCAGATCTTTTGGTGAACACTCTGT gtctaccgttcactcttacctataccttaatgggggagtggaaaatgggtcctgtcctgt gccacctggtgccctatgcccagggcctggcagtacaagtatccacaatcaccttgacag taattgccctggaccggcacaggtgcatcgtctaccacctagagagcaagatctccaagc Exon 4 + 8156 8226 1 Terminal 71 65 Marginal gcattgctgagagacggtgggaaaataagttgactttcaaatcacgttaggacctggatt gaggaggtgtgcagttcgctgctccctgcttggcttatgaaaacaccactgaacagaaat ttctccagggagccacaggctctccttcatcgcattttgatttttttgttcattctctag ACAAAATCCATCAGGGAATGCTGCAGGAAACGATTGCCAACTATACGAATGGCTTCGAGG AGATAAACTGA aatttgctatataattaatattttggcagatgataggggaactcctcaacactcagtggg ccaattgttcttaaaaccaattgcacgtttggtgaaagtttcttcaactctgaatcaaaa gctgaaattctcagaattacaggaaatgcaaaccatcatttaatttctaatttcaagtta --------------------------------------------------------------------------------