-------------------------------------------------------------------------------- GrailEXP v3.31 [March, 2002] http://compbio.ornl.gov/grailexp/ Authors: Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and Edward C. Uberbacher, 1996-2001 Reference: "Automated Gene Identification in Large-Scale Genomic Sequences", Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4, Number 3, 1997 Sequence: >GrailEXP Input Sequence (5284 bp) -------------------------------------------------------------------------------- PERCEVAL Exon Candidates (3 predicted) Index Std Begin End Frm Type Len Scr Quality Exon 1 + 1441 2139 0 Initial 699 86 Good taatgcaattggtcattttctctttacagattgttcagttcaagggaatgaagaattcag aataattttggtaaatggattccaatatggggaataagaataagctgaacagttgacctg ctttgaagaaacatactgtccatttgtctaaaataatctataacaaccaaaccaatcaaa ATGAATTCAACATTATTTTCCCAGGTTGAAAATCATTCAGTCCACTCTAATTTCTCAGAG AAGAATGCCCAGCTTCTGGCTTTTGAAAATGATGATTGTCATCTGCCCTTGGCCATGATA TTTACCTTAGCTCTTGCTTATGGAGCTGTGATCATTCTTGGTGTCTCTGGAAACCTGGCC TTGATCATAATCATCTTGAAACAAAAGGAGATGAGAAATGTTACCAACATCCTGATTGTG AACCTTTCCTTCTCAGACTTGCTTGTTGCCATCATGTGTCTCCCCTTTACATTTGTCTAC ACATTAATGGACCACTGGGTCTTTGGTGAGGCGATGTGTAAGTTGAATCCTTTTGTGCAA TGTGTTTCAATCACTGTGTCCATTTTCTCTCTGGTTCTCATTGCTGTGGAACGACATCAG CTGATAATCAACCCTCGAGGGTGGAGACCAAATAATAGACATGCTTATGTAGGTATTGCT GTGATTTGGGTCCTTGCTGTGGCTTCTTCTTTGCCTTTCCTGATCTACCAAGTAATGACT GATGAGCCGTTCCAAAATGTAACACTTGATGCGTACAAAGACAAATACGTGTGCTTTGAT CAATTTCCATCGGACTCTCATAGGTTGTCTTATACCACTCTCCTCTTGGTGCTGCAGTAT TTTGGTCCACTTTGTTTTATATTTATTTGCTACTTCAAG gtaagaaaactttttttctatcatttccatttttaccttctttacacagaattcctcatc aaatgagtgtttctatttaaacttttttcttccatagatatatatacgcctaaaaaggag aaacaacatgatggacaagatgagagacaataagtacaggtccagtgaaaccaaaagaat Exon 2 + 2237 2644 0 Internal 408 85 Good ctcataggttgtcttataccactctcctcttggtgctgcagtattttggtccactttgtt ttatatttatttgctacttcaaggtaagaaaactttttttctatcatttccatttttacc ttctttacacagaattcctcatcaaatgagtgtttctatttaaacttttttcttccatag ATATATATACGCCTAAAAAGGAGAAACAACATGATGGACAAGATGAGAGACAATAAGTAC AGGTCCAGTGAAACCAAAAGAATCAATATCATGCTGCTCTCCATTGTGGTAGCATTTGCA GTCTGCTGGCTCCCTCTTACCATCTTTAACACTGTGTTTGATTGGAATCATCAGATCATT GCTACCTGCAACCACAATCTGTTATTCCTGCTCTGCCACCTCACAGCAATGATATCCACT TGTGTCAACCCCATATTTTATGGGTTCCTGAACAAAAACTTCCAGAGAGACTTGCAGTTC TTCTTCAACTTTTGTGATTTCCGGTCTCGGGATGATGATTATGAAACAATAGCCATGTCC ACGATGCACACAGATGTTTCCAAAACTTCTTTGAAGCAAGCAAGCCCA gtcgcatttaaaaaaatcaacaacaatgatgataatgaaaaaatctgaaactacttatag cctatggtcccggatgacatctgtttaaaaacaagcacaacctgcaacatactttgatta cctgttctcccaaggaatggggttgaaatcatttgaaaatgactaagattttcttgtctt Exon 3 + 3264 3446 0 Terminal 183 86 Good attgtcaacagattgggccatccttactttatgataggcatcattttagtgtgttacaat agtaacagtatgcaaaagcagcattcaggagccgaaagatagtctgaagtcattcagaag tggtttgaggtttctgttttttggtggtttttgtttgttttttttttttttcaccttaag GGAGGATTTAATTTGCTCCCAACTGATTGTCACTTAAATGAAAATTTAAAAATGAATAAA AAGACATACTTCTCAGCTGCAAATATTATGGAGAATTGGGGCACCCACAGGAATGAAGAG AGAAAGCAGCTCCCTAACTTCAAAACCATTTTGGTACCTGACAACAAGAGCATTTTAGAG TAA ttaatttaataaagtaaattagtattgctgcaaatagttaaattatatttatttgaattg atggtcaagagattttccattttttttacagactgttcagtgtttgtcaagctttctggc ataaatatgtactcaaaaggcatttccgcttacaatttgtagaaacacaaaatgcgtttt --------------------------------------------------------------------------------