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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (8781 bp)
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PERCEVAL Exon Candidates (3 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1201       1868   0    Initial    668    90   Excellent
tgccccggaccctgcacttgccgccgctttcctcgcgctgctctggaccttgctagccgg
ctctgcacctcccagaagccgtgggcgcgccgctcagctgctccatcgcctcactttccc
aggctcgcgcccgaagcagagccatgagaaccccagggtgcctggcgagccgctagcgcc
ATGGGCCCCGGCGAGGCGCTGCTGGCGGGTCTCCTGGTGATGGTACTGGCCGTGGCGCTG
CTATCCAACGCACTGGTGCTGCTTTGTTGCGCCTACAGCGCTGAGCTCCGCACTCGAGCC
TCAGGCGTCCTCCTGGTGAATCTGTCTCTGGGCCACCTGCTGCTGGCGGCGCTGGACATG
CCCTTCACGCTGCTCGGTGTGATGCGCGGGCGGACACCGTCGGCGCCCGGCGCATGCCAA
GTCATTGGCTTCCTGGACACCTTCCTGGCGTCCAACGCGGCGCTGAGCGTGGCGGCGCTG
AGCGCAGACCAGTGGCTGGCAGTGGGCTTCCCACTGCGCTACGCCGGACGCCTGCGACCG
CGCTATGCCGGCCTGCTGCTGGGCTGTGCCTGGGGACAGTCGCTGGCCTTCTCAGGCGCT
GCACTTGGCTGCTCGTGGCTTGGCTACAGCAGCGCCTTCGCGTCCTGTTCGCTGCGCCTG
CCGCCCGAGCCTGAGCGTCCGCGCTTCGCAGCCTTCACCGCCACGCTCCATGCCGTGGGC
TTCGTGCTGCCGCTGGCGGTGCTCTGCCTCACCTCGCTCCAGGTGCACCGGGTGGCACGC
AGACACTGCCAGCGCATGGACACCGTCACCATGAAGGCGCTCGCGCTGCTCGCCGACCTG
CACCCCAG
gtattggcccagtgcatgccgacaggcccaggccagggacttgggcgctccctgggcagt
tggcttgaggagcctgtgggcatcaccaccgttactccgcccagagttcaccagccacag
cactgcccctgcacgctgctcacaggggtttcctgttggttcattggtgcagacactgcg

Exon  2 +       2749       2862   2   Internal    114   100   Excellent
caaaaaagcaagcctaccccttgttctttctctctcccccatccctctgtcctcctcagg
ttccaggctaaacatcctcctgaaaccctcctgtctgccctcacttcagcccctgggctc
tgggcctgggttctgtccccaccctgccatcatcctgaccactgtcctctgtccccacag
TGTGCGGCAGCGCTGCCTCATCCAGCAGAAGCGGCGCCGCCACCGCGCCACCAGGAAGAT
TGGCATTGCTATTGCGACCTTCCTCATCTGCTTTGCCCCGTATGTCATGACCAG
gtgggtcctggcagtccggctcctgttgtgggaacagctgggtgggcttggcctcagttg
agtaggcctctgaggtttcccagcaagatatctggagggcggccaccaccagaggaccct
cctccacacctgacgggctcagggctgtgcttcagctcctgggaaagatcctgggaggga

Exon  3 +       7273       7582   2   Terminal    310    85        Good
tgtaatcccattttaggaagaggagcccaaggctcagggtgctggtgcagagccccctgg
ctagtgagcatcagggctgcggtacgtacttgagtatggttctagcaccttcccccggag
cgtgagtgcgtggcaggtgctgtcactgtggctgagttagctgctccgcttccccaacag
GCTGGCGGAGCTCGTGCCCTTCGTCACCGTGAACGCCCAGTGGGGCATCCTCAGCAAGTG
CCTGACCTACAGCAAGGCGGTGGCCGACCCGTTCACGTACTCTCTGCTCCGCCGGCCGTT
CCGCCAAGTCCTGGCCGGCATGGTGCACCGGCTGCTGAAGAGAACCCCGCGCCCAGCATC
CACCCATGACAGCTCTCTGGATGTGGCCGGCATGGTGCACCAGCTGCTGAAGAGAACCCC
GCACCCAGCGTCCACCCACAACGGCTCTGTGGACACAGAGAATGATTCCTGCCTGCAGCA
GACACACTGA
gggcctggcagggctcatcgcccccaccttctaagaagccctgtggaaagggcactggcc
ctgctacagagatgccactggggacccccagacaccagtggcttgactttgagctgaggc
tgaagtacaggaggaggaggaggagagggctggatgtgggtgtggacagcaggagtggcg

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