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GrailEXP v3.31 [March, 2002]                   http://compbio.ornl.gov/grailexp/

Authors:  Doug Hyatt, Manesh Shah, Victor Olman, Richard Mural, Ying Xu, and 
  Edward C. Uberbacher, 1996-2001

Reference:  "Automated Gene Identification in Large-Scale Genomic Sequences",
  Xu, Y. and Uberbacher, E.C., Journal of Computational Biology, Volume 4,
  Number 3, 1997

Sequence:  >GrailEXP Input Sequence (73622 bp)
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PERCEVAL Exon Candidates (16 predicted)

 Index Std   Begin       End     Frm    Type     Len    Scr    Quality

Exon  1 +       1538       1634   1   Internal     97    57    Marginal
gcgcgccgtggggtgcaaaccccgagcgtctacgctgccatgaggggcgcgaacgcctgg
gcgccactctgcctgctgctggctgccgccacccagctctcgcggcagcagtccccagag
aggtaacgcgacccctgcccgggctccctttctctcctttcccttcctccacccctgcag
CCTCGCCTGCTGCTTTACTCAACCCGCTTCGGCGCGCCTGGGTGACCCAGCGCTCGACCC
TGCGCTCCCGCGCGGTGCAGGCGTCCGCCACCCTCGG
gtaggctaagcccgggacttcgggacccatccttgctcgcggggctccctcctgggtccc
cagcccggcctgccggatggccctgcagctggcttggccaccacgtggcggggcttaatc
tgacttgtgtctcccctctcctcgtgtctatggggccagagggaagcactggggcccaaa

Exon  2 +      12980      13126   0     Single    147    56    Marginal
tatttatttattttttaacctcccttccaggtctgtaataaggaatagaagtgtggtgtt
tgtgcagaacttgtctacaagccaacttgtttcaagctggttggtaatccatttggagca
tggggagttcccattggaaatacccattcctactcactatgtcctttcttcatttaaaat
ATGATCTTTCATAAGATCATGGACTTTGTCCACAGAATTGCTTCCAAACCCTCCCTACTT
CAACCAGCCACTGCCTACCCCATCATCAACCAAGGGCATTCCATAACCGTTAAGACTTTT
CAAAGTAGAGAAAAGATTGTCAGTTAA
aaattgcaaataattttctctgtttatagatggagactttaatttacctttggagtccca
aatcatcagaataggccccactaattacataaattaagtaaagactgtattcatttattc
ctaatagagacacaacatgatatggtggttaagagtgtattttctaagagtgtaatttct

Exon  3 +      15803      15883   0    Initial     81    82        Good
tccacctgcttctgggcagaacagcatagaaatgataaatctccgaagaaaagtatcaac
ttgtttccaaagatttctggtaaaaggagatgtattagttcattttcacactgctataaa
aaactacctgagactgggtaatttataaagaaaagagttttaattgactcacggtttttc
ATGGCTGGGAAGGTGTCAGGAAACTTACAATCATGGTGGAAGGTGAAGGGGAAACAAGGC
ACGTCTTACATCGTGCAGAGA
gtgaggggggtgtgccacatttaaaaccatcagctcggccaggtgcggtggctcacgcct
ttaatcccaacactttgggaggccaaggcaggcggatcacaaagtcggaagatcaagacc
atcctggctaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtg

Exon  4 +      32193      32390   0    Initial    198    44    Marginal
gatgactagaacactcctgtctgtgcaaggttcacagtcagctgcaaggccaggtgcaca
ctgcagacacctgtgagacctgtggatgccgaggaggcaccaaaggggagagggaacagt
gggctctggctctgggaggtgaaagagggaagataacatccccccaggtctaggaattgg
ATGGGAGAGGATGAGTTCCTCGAGAAGGTGTATTTGGCCCCAACTTTGAAATTGGAGTGG
AAGTCAATAGTCTGGGAAGGGAAGAAAGAATATTCCAGGCAGGGAATTTACATACGACCT
CACAGAGGTGGGAAAGGAAAGGGGCCAGGTGTGTTTGAGGATGGACAGAATGATACCCAA
GACACAAATGGCTGGGGG
gtagatgaggccagaatgttagcctggggtgggcccagtaccctatgattctgaggagtt
tggacttcattctgcaggtaataggaagctcctctgttattctttcattcttttattcct
tcaacagctgttcattcattcaacctgtggttgttgggattcagcaaggcagcttcaaac

Exon  5 +      33056      33127   1   Internal     72    81        Good
tgcccggagttctccttgaacacatggctaaatgtgaaagacaaccagtgataacctgtc
tctcctttccaaaccctttcctgacacaactaacagctttcaaggacagcaggcaggaca
cacactgatcacatgaaacagcttgggcttcagccactaggtgctatttactccttccag
TCTCCAAGCATTTGCTGCTGCTGCTCCTCGCAGCCACAGGAGGTGCCAGTGCTGTGGTTG
ATGCCAGACCTG
gtaaggcacccgaagcaccaggctcgcaccagctggttcagtaggaagcatgggaaagta
caggttcattgcacacatacgatagattgggaaatggagactcttacttactatagagta
tatagaatatcctggatgctcttgcctagagtgtttctgaaatttattgctccgtgtgta

Exon  6 +      34181      34289   1   Internal    109    58    Marginal
tgcagaggccatggaaattacagtatgtgcctcgatgattctgaattttctcccctttgt
ggttgctccaaatcatctacgtctactcgaaagtgaggtgctttgacctgaattcagccc
atggtactccaagcagtatacagttaggcaaagctgatgtctcccttactattcacacag
CCTGTGTTGGCTTGCTTGGTGGCCACGTCACACTGTTGATTCCTAGAGAGCCTGTAGGAA
CCCCAAACAACAAAGGTGTCTATACAGTTACCTGCCACAGAGGTGCTGG
gtaaggacacctggtgaatgtcactatccatttgttaatcagggtaattaacacaaagtg
caaaactgctctaacaaacaacttccccagtctcagtggcctaacccaataaatggctgt
ttcttgttcccttcaccgtccagtgcagtgggagggctgttctgggcagctctctcttct

Exon  7 +      36289      36354   2   Internal     66    90   Excellent
atcaaagtagtaaatgatgtgtttagggaggaaaagctgcagacacaaaggagcattccc
atttctgcagaaatgcactcctccacacagaagaagctggcctcctgtttgcattttgct
catagtatcctaaaaatgcaaaccatcagcttaaaatgcagttcctctgtcctctggcag
GAGCCCCGGCATCGAGAGCTTTGGCACGTTTGCTTGTGACAGTGAGGACATCCCAGGAGC
TGTGGG
gtgagttgaggtcactgtggaagctctacgctttggcccacacgggactttgctgttgat
aggaaaaaacacaaacgtcgaattgtttttctgcaggcagataatgaatccccaaatcaa
tataatctcacaaaacagtagcttcatctatttgccaccaaaaaagcaccttgagtttct

Exon  8 +      37116      37150   1   Terminal     35    67    Marginal
gacagagcccaccttcgggtttgggggtgtttaggcatgtctccaggagggagtgacctt
gaaactgagaccctaagcatgagtgagagaagggcagaagtgggaacatgttccaggtag
aaggaatagcttgtgaaggtcctatgtatttttatttttccttcttctcttcttcctcag
CCAGAAAATTCAAGGATGCCCAGGTTGTGGAGTGA
tatgtaaacattatcccattttcccttttttttttttttttaaacagggtctctctctat
tctccaggctagagtacagtgtgatcatggctcattggagctttgatgtcccaggctcaa
gtaatcctcacacgtcagcctcctaagtagctgggactacaggcatgcaccaccacatcc

Exon  9 +      38419      38481   0   Terminal     63    78        Good
ggtcagcatgtgttcaaaattgcaatgatgtaacccagtttctattgctgatcatatttg
tgtctcattctcaaattttcattgccatgggaacaggtacaaaacttttgggaacaaatg
atttattttattgggaatgagcatccaagtcctgtagttaatttcaacacctctctacag
GAGAGAGTCAACAGAATTGTCTACGTAGTGTCAGAGAACCAAGAACCTGCCAATGAAACA
TGA
ttatacctccctattcctctccttgatgaaataatctaaaagcctcctggacagtcttcc
tcgcttcttgcaaattttaactcctggttcactgtcactgtcttcaacactcttccttgt
cctaatcaactgtaatttcaatatctatatgggtgatcttctcaggtctttaacctcttc

Exon 10 +      41821      42076   0   Internal    256   100   Excellent
gtacttaaattttttaggaatgcaatatgctagaaaacttcccttgggttagttcagata
tgagagaggaaaaagcattatcttggatattatactttacacacttaagtaagtgactag
atgtcaaagcctcagatattgttttcatgacagttttctaattggcgcttttcttggcag
GTTCCCGAAGGAAAAGTAGTCGTTCTCAATTTCCGATTCATAGACCTCGAGAGTGACAAC
CTGTGCCGCTATGACTTTGTGGATGTGTACAATGGCCATGCCAATGGCCAGCGCATTGGC
CGCTTCTGTGGCACTTTCCGGCCTGGAGCCCTTGTGTCCAGTGGCAACAAGATGATGGTG
CAGATGATTTCTGATGCCAACACAGCTGGCAATGGCTTCATGGCCATGTTCTCCGCTGCT
GAACCAAACGAAAGAG
gtactgtttccacataatggcaataacaacagtaatgttggttcactgttcttggcactt
gatgtttatttactcctttaaagcttaagagtggttctcaaagagctagtgaatgccatc
aaaccatgatgagaccaatacaaaaaatcagccttttaatttaagtccacatgcattctt

Exon 11 +      51394      51499   1   Internal    106   100   Excellent
cacagttttttttttaactaaataagaaatatgcaacaaaaagcacttaatgcatacttt
ttttacaaaggaaaatcgtagtatcctccaaatctggggagaggaagaattccatttgag
gttattcaacaatgctattaatatttgacacttctattgtgctttctctaaagcttatag
AATTAAAGTTTGAGAAGTTTGATGTGGAGCGAGATAACTACTGCCGATATGATTATGTGG
CTGTGTTTAATGGCGGGGAAGTCAACGATGCTAGAAGAATTGGAAA
gtattgtggtgatagtccacctgcgtaagtagcacctatttatgtctttaatagttttat
ggctctaaacttgtttcttgttcagtttcccaatcacatttgttttctggaagattttat
gttgttgttgttttgttaaattattgggtcctctattagttctcgcactgctgtaaagaa

Exon 12 +      59656      59871   0   Terminal    216    47    Marginal
tgttaaattttttctacttctgaattagtttttaaacagaattaatcagacagcattttt
ttaaccattgtgtaaataacaatagcaaaacttaaatgaaactatcttgtgtaatatagt
aatcccctaagattttagagagcttttgagcctcacttaccatctccactaaatctttag
TGCCAGCTAACCAGGAAGCTCCTAAAATTAGAGCTCTTAATCAATGATGCCATTCATGAA
CACCAAAACAGATTCATCACTTTCTTTTTTTTCCTTTACAGCATTTTGCTAATGGAGATT
ATAATAGAAATGTTTCCATTTCAGACATACCGAAGAACTGCCATTGAAAATGAAATGGAA
GTCCTTTGCATGGCTTTCTTAGCCCGGAGTGGATAG
aaaagataatcagtccactgagataatccctctggctgcatctttacagggcgtgggaat
ttgttcaccagatttgtccattttatgctctgtagccaacatggcaaacccaggccagct
tgaacgcaagtcttagttcagagaatctgccttttcccaatcaggcaaatcatgaggtgc

Exon 13 +      60447      60601   2   Internal    155    92   Excellent
gctgagcaaacactcggtaaatgttagctattagaattggtatttttaaacgttttaact
tttaagtttaaacaactggtaatctattgtcggaagttaatggaaaactagaaaatttta
cattttcagagaggcaccacttttaagtatttataaaaaaacacatttttctttttttag
GCCAATTGTGTCTGAGAGAAATGAACTTCTTATTCAGTTTTTATCAGACTTAAGTTTAAC
TGCAGATGGGTTTATTGGTCACTACATATTCAGGCCAAAAAAACTGCCTACAACTACAGA
ACAGCCTGTCACCACCACATTCCCTGTAACCACGG
gtaagttttcctgtttggaagtttgtgcaaaaactttaggagtataagaagaattctttt
aaagtagaaaaaaaataagaggaagatacttgaaattaaagttaaataggatgaaagctt
tggtaagagaataatatgactgcattaatgaaagaaaggtatggggtgtaagaatgcttg

Exon 14 +      62589      63220   2   Internal    632    85        Good
ggtagagaactggattcggaggtggatttataaattaggctgtcgccttgttgggtttga
ggtgtccgtgagattttccagtggatatgccatgcgtaggggtacacgggtccccagact
aaaagatttaagccagatttaaatttaagagtcacccatcatccacaactcgggtcacag
CGCGCCCCTCCCCAAGGTGGTCTTCCGCGACCCGTACTGGTTTAAGAAGCGGACGGAGCT
TTTCATTGCTGCCGAGGGCATTCACACGGGCCAGTTTGTGTATTGCGGCAAGAAGGCCCA
GCTCAACATTGGCAGTGTGCTCCCTGTGGGCACCATGCCTGAGGGTATGATCGTGTGCTG
CCTGGAGGAGAAGCCTGGAGGCCGTAGCAAGCTGTCCTGGGCATCAGGGAACTATGCCAC
TGCTATCTCCCACAACCCTGAGACCAAGAAGACCCGTGTGAAGCTGCCCTCTGGCTCCAA
GAAGGTTGTCTCCTCAGCCAACAGAGCTGTGGTTGGTGTGGTGGCTGGAGGTGGCCGAAC
TGACAAACCCATCTTGAAGGCTTGCCAAGCCTACCACAAATATAAGGCAAAGAGGAACTG
GTGGCCACGAGTATGGGATGTGGCCATGAACCCTATGGAGCATCCTTTTGGAGGTGGCAA
CCACCAGCACATCGGCATCCCCTCCGCCATCTCAGAGATGACCCTGCTGGCTGCAAAATG
GGTCTCATTGCTGCCCGCCAGACTGGACGTCTCTGGGGAACCAAGACTGTGCAGGAGAAA
GAGAACTAGTGCTAAGGGGCTCAATAAAGTTT
gtctttatgccaaaaaaaagtaagagtcatcaatatatagatagttgaaacaatgatcaa
gaacgagatgacctaggcagagattgagggcaggaggaggagaggcgcggagattaaccc
tctagaaacttccgtctttttgaagagaaggttacactggcaaaggtgactgaaaagcag

Exon 15 +      71828      71958   1   Terminal    131   100   Excellent
ggcaagacccccatctctaaaaagcaaaaacaagaaacccagattttatcgtggatggaa
tacatgtataatcttaccatttgcagaagagaacatttatctagaggtaacttacagtct
aagttgtttcacacatgatacatagagaaaaagattaatttctgtattctctttctttag
GTCTAAATTACATTATTATGGGCCAAGTAGGTGAAGATGGGCGAGGCAAAATCATGCCAA
ACAGCTTTATCATGATGTTCAAGACCAAGAATCAGAAGCTCCTGGATGCCTTAAAAAATA
AGCAATGTTAA
cagtgaactgtgtccatttaagctgtattctgccattgcctttgaaagatctatgttctc
tcagtagaaaaaaaaatacttataaaattacatattctgaaagaggattccgaaagatgg
gactggttgactcttcacatgatggaggtatgaggcctccgagatagctgagggaagttc

Exon 16 +      73282      73468   0    Initial    187    72        Good
gtaggaggttaccagccaggggctgtgggagagcggataaccatccctatccaaagaagg
ctgaaagaacattagggatgaacaaagacgtgggtcacaaactcttccacggtagaagca
aagttttggaaataagggaaaatactcttttagatgaaaacaataattcccagccctagg
ATGACCAGACATTTAAAGGGTGGCAAAATAGAAGTTCAGAAGGAACTCTGTTCCCTCTGT
TACGGCAGCTGGGTGAGCCTAAGGAAACGACAAAATTGGGCTGACAGGCAGGTCAGAAAC
TGCTCCTATACTTTCCCACTGAGGAGCCGTCAGCAGGAAGTAGATGAACTAGAAGACCCT
GATGACA
gtgggtgactggcttccctggccagtgtcagcttttagaaagttctcttagccagctgaa
cttcgcagaccagctgcgcccagcacaggatgtaactgtggactcctcattgattccagc
cttctcaaagcaagttgcttccctttaagaatacg
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